barSeed - Barley Seed Development Database

Probe CUST_3731_PI390587928

Source Contig U35_5217

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3731_PI390587928	Hv_44K_v2	GGACAATAGAGCTGGTGGGAACATGAAGGACTACTTCCAAACCACATACAAATTCTTGGG	1188	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56684.1	2573	6e-24	1423 - 1481	100	59 / 59	plus	ABC12795
MLOC	MLOC_56684.2	2502	6e-24	1423 - 1481	100	59 / 59	plus	ABC12795
MLOC	MLOC_56684.3	2567	6e-24	1423 - 1481	100	59 / 59	plus	ABC12795
MLOC	MLOC_56684.4	1954	6e-24	1404 - 1462	100	59 / 59	plus	ABC12795
JLOC1	JLOC1_36689.3	2410	3e-24	1355 - 1413	100	59 / 59	plus
JLOC1	JLOC1_36689.2	2227	3e-24	1364 - 1422	100	59 / 59	plus
JLOC1	JLOC1_36689.1	2406	3e-24	1364 - 1422	100	59 / 59	plus
Harvest21	ABC12795	2002	3e-25	1189 - 1248	100	60 / 60	plus	ABC12795
Harvest35	U35_5217	1308	3e-25	1189 - 1248	100	60 / 60	plus

Contig Sequence (1308 bp)

>U35_5217 1308 Hv_44K_v2
CCCAATCCCAACTCCCAAAGTTAGGGATAACCCCAGCGGGTCGGCGGCTGCCCTCCCTCC
CGCTCCGACGCCGCCGCGGCCCGTGGTTCTGGTGGAGGAGATGGGCGCCCCCTCGTACCG
GCTCGCGGCGGCGGTCACGGCCGAGGCCGAGTTCCTCGTCGCCCGGCAGCTGCCCCCGCC
GGGGGTAGGGGAGGAGGAGGAGGACTACCGGCGCTACGTCGACAGCGACCTCTACGACCT
CCCGTCGGCGCCCCTGCGGCGCCTCGCGGAGGGCGAGCCTGCCCGGCCGGGCGTGGCCGT
CGCCGTCGCGGATGCGGAGGCGGAGGGCTCCCTCGACCTCTCGCGCCTCGACGTCTCCGC
CGCCCTCGATCAGATTTTGAGCCAATTGGGTTTGACAAATGCAATGTGCGGGGAATGGAG
GCTGCTCAAGTATGTTGAGGAAGCCGAGTTCGGCCCTGACGCGGGTGTCAACACGGTGCT
TATCATCACGTCGCTCGAGTCGAAACCGGAGGCATTGCAAGACTCCTGTAAATGGATGTC
CAAGGAGGGTGCTCGGGAATTGCTTTCTGAAGTGAAGCCCGGTGGTACTCGGATTGGGCC
GTATGTGCACGTTGGGTTTCTGAAATCGGAGCTGTCGTCAAATTGTACCGCTGCCTCCAC
ATTGCTTTCCCAGGAGTACCCTCCCGGAATAACACTTGTACCAATGAAGAGTAGTACATT
ACGACCTTTTCGTACAACTAATCTTGTGGTAATACAAGCAACCAGTGGCACATGTGGATC
AAAGCGCTCTGATTATTTTGCTTGTGGAGATGCTTTACTGATAGATCCTGGATGTTGCTC
ACAGGTTCATACGGAGCTTGCAGATCTTGTTAATTCCCTTCCAAAGAAGTTATTGGTCCT
TGTTACGCATCATCATAATGATCATATTGAGGGTCTTTCGGTTGTTCAGAGATGCAATCC
TGACGCTGTTCTTTTGATACATGAAAACACGATGAAGCGCATAGGGAAAGGGAATTGGTC
AACCGGCTATACTGCAGTGACTGGTGGTGAAAACGTATGCATAGGTGACCAGGAACTGCA
AGTCATTTTTGCTCCTGGTCATACAGATGGTCATATGGGGCTTCTCCATGTCAATACTAA
TGCACTAATTGTTGGAGATCATTGCGTAGGGCATGGAAGTGCAATATTGGACAATAGAGC
TGGTGGGAACATGAAGGACTACTTCCAAACCACATACAAATTCTTGGGAGATGTCGCCAC
ATGTGCTAATTCCAATGCATGGAAGAATCAACCTATGGCCCAAGCATA

Homology of Contig U35_5217 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04200.2	490	0.0	protein\|metallo-beta-lactamase family protein, putative, expressed
Brachypodium v1_2	Bradi2g02250.4	484	0.0
Arabidopsis v10	AT1G25375.1	524	2e-117	Metallo-hydrolase/oxidoreductase superfamily protein \| chr1:8900279-8903220 REVERSE LENGTH=524