barSeed - Barley Seed Development Database

Probe CUST_37315_PI390587928

Source Contig U35_11117

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37315_PI390587928	Hv_44K_v2	CCATGCACTAGATCACCCTTTAATTTGTTGGTAGTTACTGCTCACCTCGCCGTATACTAC	554	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.089	1.154	1.451	1.269	0.462	0.378
Raw	755.663	1362.512	1429.029	1958.771	240.474	218.307

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5828.2	874	7e-23	102 - 161	98	59 / 60	minus	ABC08128
MLOC	MLOC_5828.1	1234	7e-23	166 - 225	98	59 / 60	minus	ABC08128
JLOC1	JLOC1_3775.1	990	4e-23	766 - 825	98	59 / 60	plus
Harvest21	ABC22702	614	3e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_11117	614	3e-25	555 - 614	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_11117 614 Hv_44K_v2
GCCTTCGGCTTCGCGTGCACCCCGCTCTACTTCGTGTGGGAGAAGACGATCGGCATGCAC
CACACCGGCAGCATCCTCAAGCGCGCCCTCGCTCGCCTCCCCATCGTCGTCCCGATCTGG
TTCCTCGCCATCATCTTCCCCTTCTTCGGGCCCATCAACTCCGCCGTCGGCGCGCTCCTC
GTCAGCTTCACCGTCTACATCATCCCCGCCGTCGCACACATGCTCACGTACCGCTCCGCC
TACGCCAGATCGAATGCGGCGGAGAAGCCGCCGGCGTTCCTGCCGAGCTGGAGCGGGATG
TTCGTGGTGAACGTGTTCGTGGTGGCGTGGGTGGTGGTGGTCGGGTTCGGGCTCGGCGGC
TGGGCAAGCGTCACCAACTTCGTCAAACAGATCGACACCTTCGGCCTCTTCGCCAAATGC
TACCAGTGTCCCCCGAAGGCGCACCTCCCGGCAGCGGGGTCACCGCCATCAGCGTCGGCG
CACCGCTAGCGACCGCTTCGATCGGAAGCACACCGTGGCAATGTGCCAGCTGGAAAGATG
GAACTCTCATCGATCCATGCACTAGATCACCCTTTAATTTGTTGGTAGTTACTGCTCACC
TCGCCGTATACTAC

Homology of Contig U35_11117 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g37470.3	483	5e-70	protein\|transmembrane amino acid transporter protein, putative, expressed
Brachypodium v1_2	Bradi2g55340.1	490	3e-66
Arabidopsis v10	AT2G38120.1	485	4e-68	\| Symbols: AUX1, WAV5, PIR1, MAP1 \| Transmembrane amino acid transporter family protein \| chr2:15973493-15976792 FORWARD LENGTH=485