barSeed - Barley Seed Development Database

Probe CUST_37306_PI390587928

Source Contig U35_11127

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37306_PI390587928	Hv_44K_v2	AGATCTTCCAGCAGCTGAGCAAGTACGAGGTGATCGACATCGACAACGACGACGAGGTCC	495	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373342	1733	2e-24	849 - 908	100	60 / 60	plus	ABC04687 ABC04689
MLOC	MLOC_50228.1	443	2e-24	159 - 218	100	60 / 60	minus	None
JLOC1	JLOC1_32068.1	443	8e-25	159 - 218	100	60 / 60	minus
Harvest21	ABC22725	720	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_11127	721	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (721 bp)

>U35_11127 721 Hv_44K_v2
CCGACACCTCGTCCGGGGGTGTCGTGCCCGTGCCCGTGCCCGTGCCGGTGAGCACAAGCA
CAAGCACCACGCCCGTGCCCGTTGCCGCCGTGGGCCTCCCGGGCAAGCCGGTGTGCTACG
AGTCGGGCCGGCGGTCGGACACGTGCGAGGCCGCCGGCGACGTGCGCGTGCAGGGCCGCA
GCCAGACCATCCAGGTCCGCCCGCTGGACCGGGAATGGAAGGTGAAGCCGTACTGCCGGA
AGCAGGACGCCTACGCGCTGTCGCACGTCAAGGAGTGGACCCTCCGGCCGCTCTCCTCCA
GCGGCCCGGTGCCGCATTGCACGGTCAACAGCTCAGCGACCGCCTTCGTGCTCTCCACCG
GCGGGTTCACGGGCAACTTGTTCCACGACTACACAGACGTGCTCGTCCCGGCGTTCATCA
CGGCGCGCCGGTTCGGCGGCGAGGTCCAGTTCCTGGTGAGCAGCTTCAAGTCGTGGTGGA
CCAACCGGTACCTGGAGATCTTCCAGCAGCTGAGCAAGTACGAGGTGATCGACATCGACA
ACGACGACGAGGTCCGGTGCTACGGTGGCGTGGTGGTCGGGCCAACGTTCCACAAGGAGC
TGGGCGTGGACGCGTCCAAGACGCCGGCAGGGTACTCGATGGTGGACTTCCGCGCGATGC
TGCGGGGCGCGTTCGGGCTGTCGCGCGCGGCGGCCGAGCCGAGCGGCGACCGGTGGGACA
T

Homology of Contig U35_11127 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g22650.2	504	1e-124	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g11300.1	502	1e-121
Arabidopsis v10	None