barSeed - Barley Seed Development Database

Probe CUST_37302_PI390587928

Source Contig U35_23102

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37302_PI390587928	Hv_44K_v2	AGGAAGCTTCACAGGCACAGAATCCCACACTGATGGCTGCACCCTATTCTCCATCTCCAT	311	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60329.3	2189	2e-24	1579 - 1638	100	60 / 60	minus	None
MLOC	MLOC_60329.2	2030	2e-24	1619 - 1678	100	60 / 60	minus	None
MLOC	MLOC_60329.4	2068	2e-24	1458 - 1517	100	60 / 60	minus	None
JLOC1	JLOC1_39327.2	2160	8e-25	552 - 611	100	60 / 60	plus
Harvest35	U35_23102	810	3e-25	312 - 371	100	60 / 60	plus

Contig Sequence (810 bp)

>U35_23102 810 Hv_44K_v2
ATGCCTTGGACTTGGAGGGAGACATCTTTGCTTAGCGGGAGGACGAGTGTTCCTCCTCCT
CCTCTTTCTTCTGCTTCTTCTTCTTTCTTCTTCTTTGGGAAAAGGGATTGATTGCGTGCG
AACGAGGCCGCGCTCGCTAGCTCCGAGCTGAGCTACCACAGCCCACAGCCAGTACTGTAC
TGGTTGGAGTGGACAGGTATTTTTGCGGTGACTAGTCCCAACTCCCAAGCAACAAGCGGC
AGGCATCGAGCAGCCAGCCAATGTATTCCTCGCACAAGAGCATCAGCAGCAGAGACAAGA
CGCCGCCGTGCAGGAAGCTTCACAGGCACAGAATCCCACACTGATGGCTGCACCCTATTC
TCCATCTCCATCGCATCCACATCCCACTGCTACTGCCCTTGTCCTGTTACTGCTGCTGCT
TCATGTCGCGCTTCTTGGCAAGTGCACGGCGGCGGCGGTGGCGAACGTGACCTTCCGGCC
GGGGGAGGAGCTCCGGAGGTACAGGCGGGTCCAGTCGCTCCTCACAAGGCTCAACAAGCC
GTCTGTCCGGACCATTCAGAGCCCGGACGGCGACCTCATCGACTGCGTGCCGGCGCACCT
GCAGCCGGCGTTCGACCACCCGAGGCTGCACGGCCAGAGGCCACTGGGCCCGCCGGCGCG
GCCGAGTGGACACCACCGCCGCCCCAATGACACGGCGGACGCCGGAGTGCAGCTTTGGGC
GGTGTCCGGCGCGTCGTGCCCGGAGGGGTCCGTCCCGGTGAGGAGGATTACGGAGGCCGA
CGTGCTACGCGCCAGCTCAGTGAGGAGATT

Homology of Contig U35_23102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g36660.1	425	2e-51	protein\|carboxyl-terminal peptidase, putative, expressed
Brachypodium v1_2	Bradi2g40687.1	408	7e-70
Arabidopsis v10	None