barSeed - Barley Seed Development Database

Probe CUST_372_PI390587928

Source Contig U35_9351

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_372_PI390587928	Hv_44K_v2	ATTATACAGAACTTGGGATCTGCCATGGCAGATGTTGTTATAGATGCCATGATTGCAGAG	581	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54047.1	2351	2e-24	805 - 864	100	60 / 60	plus	ABC18763
JLOC1	JLOC1_34772.1	2219	8e-25	686 - 745	100	60 / 60	plus
Harvest21	ABC21309	664	3e-25	582 - 641	100	60 / 60	plus
Harvest35	U35_9351	664	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_9351 664 Hv_44K_v2
CCTCACAAACCCCGTCAAGCCGGAGGACATCCATCCTCCGACGTCTCCGTGCATGTGTCA
TACGGGCAGCGCATTCCCGCATCTCTCGCACCGCCCTCACTCCAATCCGTCTCTCTCCCC
AACTCCCGATCCAACACCGAGATCTCCCGGAGGTTTCTTTTGCCGGAGGAGGAGGGGGAA
ATCCGTTTCCCTCGTGAGTCGTGAACATGGCGGAGGCGGAGGCGGCCTCGCCGTGGTGGG
CGGGGCGGATGGCTGCGGCGTTCGGGGCGCCGTTCCTGTGGCTCGTCTGCCTGATCTACT
TCATCCAGGGTTTCAGATCTTTTGTCTGGACAGCTGTCTCGTATCAAATGAAGGACATGA
TGAAGCTGTCACCCTCAACATCACAATTTTTGGTCTCTGCTGCATTTTTTCCTTGGAGCA
TAAAACCTATATATGGGATTGTGTCGGACTGTATTCCAATTAAGCAGAGGAAGCGTGTAC
CCTATTTGATAATTTCTAGTGGTCTTTCTCTATTTCCATGGCTTATCATTGGGCTGTCAA
AACATTTGAGGAGCTCAAGCAATCTTTTTACACTAATGTTGATTATACAGAACTTGGGAT
CTGCCATGGCAGATGTTGTTATAGATGCCATGATTGCAGAGGCAGTTCGATCAGCAGGGC
CTGA

Homology of Contig U35_9351 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g14100.1	503	7e-85	protein\|BT1 family protein, putative, expressed
Brachypodium v1_2	Bradi2g08527.1	503	6e-89
Arabidopsis v10	AT5G54860.1	491	3e-62	Major facilitator superfamily protein \| chr5:22284721-22287025 FORWARD LENGTH=491