barSeed - Barley Seed Development Database

Probe CUST_37294_PI390587928

Source Contig U35_14701

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37294_PI390587928	Hv_44K_v2	AAGGCCACCCAGCTCTATGACAACCATCCTAGCGCATTCATGCTCCAGCAGTTCGAGAAC	591	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69242.2	5797	2e-24	2388 - 2447	100	60 / 60	plus	ABC45603 ABC47595
MLOC	MLOC_69242.4	1176	2e-24	360 - 419	100	60 / 60	plus	ABC45603 ABC47595
MLOC	MLOC_69242.1	1333	2e-24	698 - 757	100	60 / 60	plus	ABC47595
MLOC	MLOC_69242.3	4961	2e-24	623 - 682	100	60 / 60	plus	ABC45603 ABC47595
MLOC	AK366243	2447	7e-23	637 - 696	98	59 / 60	plus	ABC05574 ABC45371 ABC45603 ABC47595
JLOC1	JLOC1_45867.1	1641	8e-25	713 - 772	100	60 / 60	plus
Harvest21	ABC01295	1418	3e-25	617 - 676	100	60 / 60	plus
Harvest21	ABC01305	1418	1e-23	606 - 665	98	59 / 60	plus
Harvest35	U35_14707	1424	3e-25	630 - 689	100	60 / 60	plus
Harvest35	U35_14701	655	3e-25	592 - 651	100	60 / 60	plus
Harvest35	U35_14705	1121	1e-23	320 - 379	98	59 / 60	plus

Contig Sequence (655 bp)

>U35_14701 655 Hv_44K_v2
CAACCGTCGCACCACTGGCAGCCGAGAGCTAGAGCCCCAAACCAAAGGAGAGAGATGGAG
AGGATGGTGATGAGGCTCATGAGGAATAAGTCTCTTCTCGCCGGAGCCTCTAGCCGCGGC
GGCGGAGGACTAGCCTCCTCCTCCATTGTCGACTCTTCCCCCTTCTCCACCCTGCAGCAG
CAGCAGCAGCAGGAAGACCCCGGTGTGCTCAACATCAGGGACACCGCCGCCCACCTCATC
GGGCGGACGCCGCTGGTGTACCTGAACAAGGTGACGGAGGGGTGCGGCGCACGGGTCGCC
GCCAAGCTCGAGTTCCTCCAGCCCTCCTTCAGCGTCAAGGACAGGCCGGCAATCTCCATG
ATTGAAGATGCGGAGAAGAAGGGATTGATCACCCCGGGCAAGACGACGCTGATCGAGCCT
ACGTCCGGCAACATGGGCATCGGCCTGGCGTTCATGGCGGCGCTCAAAGGGTACGAGCTC
GTGCTGACGATGCCGTCCTACACCAGCCTCGAGCGGAGGGTGGTCATGAAGGCCTTCGGC
GCGCAGCTCGTGCTCACCGACCCGGCCAAAGGGATGGGGGGCACCGTGAGGAAGGCCACC
CAGCTCTATGACAACCATCCTAGCGCATTCATGCTCCAGCAGTTCGAGAACCCTG

Homology of Contig U35_14701 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g08350.4	229	1e-92	protein\|cysteine synthase, chloroplast/chromoplast precursor, putative, expressed
Brachypodium v1_2	Bradi5g00610.1	379	2e-96
Arabidopsis v10	AT3G61440.1	368	4e-69	\| Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 \| cysteine synthase C1 \| chr3:22735885-22737792 FORWARD LENGTH=368