barSeed - Barley Seed Development Database

Probe CUST_37291_PI390587928

Source Contig U35_14704

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37291_PI390587928	Hv_44K_v2	TTTGAGTTGTGGGGATCATTCATGGGTCAAGTGATACTATGTGCACCAGTTTCTGCCAAA	635	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69242.2	5797	2e-24	3595 - 3654	100	60 / 60	plus	ABC45603 ABC47595
MLOC	MLOC_69244.1	2567	2e-24	275 - 334	100	60 / 60	plus	ABC45603 ABC47595
MLOC	MLOC_69242.3	4961	2e-24	1397 - 1456	100	60 / 60	plus	ABC45603 ABC47595
JLOC1	JLOC1_45867.1	1641	8e-25	1487 - 1546	100	60 / 60	plus
Harvest21	ABC01293	675	3e-25	20 - 79	100	60 / 60	minus
Harvest35	U35_14704	711	3e-25	636 - 695	100	60 / 60	plus

Contig Sequence (711 bp)

>U35_14704 711 Hv_44K_v2
CATGGGCATCGGGAGCGGCGGTACTGTCACCGGCGTCGGCAAGTACCTTAAGGAGAAGAA
CCCCAATGCCAAGATCTATGGAGTTGAACCTGCCGAAGCAAATGTTCTCAATGGTGGCAA
GCCAGGGCCTCACCTCATCACTGGAAATGGAGTGGGATTCAAGCCAGACATTTTGGACAT
GGATATAATGGAGAAGGTTCTTGAGGTGAAAGGTGAGGATGCTGTCAAGATGGCACAACA
ATTGGCGCTGCAAGAGGGTCTGCTGGTGGGGATATCATCAGGAGCCAACACGGTGGCAGC
GATTGAACTTGCAAAGAGGCCTGAAAACAAAGGAAAGCTCATCGTGACTGTTCATCCAAG
CGCGGGAGAGCGATACTTATCGTCGGCGCTGTTCGAGGGTCTGAGGAAGGAGGCCGAGGC
TATGCAGCCAGTGCCAGTGGACTAACTTGGAGCCATATAATGCATACGGAATAAATTCAC
TGCATTACCATGTTGCAAGTGCTAGTTATATGTGCCTCGTTTGCAATTCCTCGGTTTGTT
CCTTCATGTGGACATTGTGTAAACAACAGTTGAAATGGTTGAAAAAAAGGACTTTTACCT
CTCTGGAGAGTGGAGATGTATGATATACATATATGTTTGAGTTGTGGGGATCATTCATGG
GTCAAGTGATACTATGTGCACCAGTTTCTGCCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14704 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g08350.2	378	1e-77	protein\|cysteine synthase, chloroplast/chromoplast precursor, putative, expressed
Brachypodium v1_2	Bradi5g00610.3	316	3e-85
Arabidopsis v10	AT3G61440.1	368	1e-69	\| Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 \| cysteine synthase C1 \| chr3:22735885-22737792 FORWARD LENGTH=368