Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37288_PI390587928Hv_44K_v2CATGTGGACATTGTGTAAACAACAGTTGAAATGGTAGAAAAAAGGACTTTTACCTCTCTG1313GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36624324473e-211321 - 13819759 / 61plus ABC05574 ABC45371 ABC45603 ABC47595
MLOCMLOC_69242.257973e-213505 - 35649758 / 60plus ABC45603 ABC47595
MLOCMLOC_69244.125673e-21185 - 2449758 / 60plus ABC45603 ABC47595
MLOCMLOC_69242.411763e-211044 - 11039758 / 60plus ABC45603 ABC47595
MLOCMLOC_69242.349613e-211307 - 13669758 / 60plus ABC45603 ABC47595
JLOC1JLOC1_45867.116412e-211397 - 14569758 / 60plus
Harvest21ABC012999984e-24852 - 90910058 / 58plus
Harvest21ABC0130514186e-221290 - 13509759 / 61plus
Harvest21ABC012936756e-22110 - 1699758 / 60minus
Harvest35U35_1470714243e-251314 - 137310060 / 60plus
Harvest35U35_147047116e-22545 - 6059759 / 61plus



Contig Sequence (1424 bp)

>U35_14707 1424 Hv_44K_v2
GGGCTTGGACACCAACCGTCACACCACACCACTGGCACACATAGACGACCATCCAGCAGC
GGAGAGCTAGAGCCCCAAACCAAAGGAGAGAGATGGAGAGGATGGTGATGAGGCTCATGA
GGAATAAGTCTCTTCTCGCCGGAGCCTCTAGCCGCGGCGGAGGAGGACTAGCCTCCTCCT
CCATTGTCGACTCTTCCCCCTTCTCCACCCTGCAGCAACAGCAGCAGCAGGAAGACCCCG
GTGTGCTCAACATCAGGGACACCGCCGCCCACCTCATCGGGCGGACGCCGCTGGTGTACC
TGAACAAGGTGACGGAGGGGTGCGGCGCCCGGGTCGCCGCCAAGCTCGAGTTCCTCCAGC
CCTCCTTCAGCGTCAAGGACAGGCCGGCAATCTCCATGATTGAAGATGCGGAGAAGAAGG
GATTGATCACCCCGGGCAAGACGACGCTGATCGAGCCTACGTCCGGCAACATGGGCATCG
GCCTGGCGTTCATGGCGGCGCTCAAAGGGTACGAGCTCGTGCTGACGATGCCGTCCTACA
CCAGCCTCGAGCGGAGGGTGGTCATGAAGGCCTTCGGCGCGCAGCTCGTGCTCACCGACC
CGGCCAAAGGGATGGGGGGCACCGTGAGGAAGGCCACCCAGCTCTATGACAACCATCCTA
GCGCATTCATGCTCCAGCAGTTCGAGAACCCTGCCAACGTCCAGGTGCACTACGAGACCA
CCGGTCCAGAGATATGGGAGGACACGCTTGGGCAGGTCGACATCTTCGTCATGGGCATCG
GGAGCGGCGGTACTGTCACCGGCGTCGGCAAGTACCTCAAGGAGAAGAACCCCAATGCCA
AGATCTATGGAGTTGAACCAGCCGAAGCAAATGTTCTCAATGGTGGCAAGCCAGGGCCTC
ACCTCATCACTGGAAATGGAGTGGGATTCAAGCCAGACATTTTGGACATGGATATAATGG
AGAAGGTTCTTGAGGTGAAAGGTGAGGATGCTGTCAAGATGGCACAACAATTGGCGCTGC
AAGAGGGTCTGCTGGTGGGGATATCATCAGGAGCCAACACGGTGGCAGCGATTGAACTTG
CAAAGAGGCCCGAAAACAAAGGGAAGCTCATCGTGACTGTTCATCCAAGCGCGGGAGAGC
GATACTTATCGTCGGCGCTGTTCGAGGGTCTGAGGAAGGAGGCGGAGGCCATGCAGCCAG
TGCCAGTGGACTAACTTGGAGCCATATAATGCATACGGAATAAATTCACTGCATTACCAT
GTTGCAAGTGCTAGTTGTATGTGCCTCGTTCGCAATTCCTCGGTTTGTTCCTTCATGTGG
ACATTGTGTAAACAACAGTTGAAATGGTAGAAAAAAGGACTTTTACCTCTCTGAAAAAAA
AAAAAAAGTGGAGATGTATGATGTGCATATATGTTTGAGNTGTG



Homology of Contig U35_14707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g08350.23780.0protein|cysteine synthase, chloroplast/chromoplast precursor, putative, expressed
Brachypodium v1_2Bradi5g00610.13790.0
Arabidopsis v10AT3G61440.13682e-167| Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 | cysteine synthase C1 | chr3:22735885-22737792 FORWARD LENGTH=368