barSeed - Barley Seed Development Database

Probe CUST_37286_PI390587928

Source Contig U35_14709

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37286_PI390587928	Hv_44K_v2	CTGCTGTACTACTATACGCAAGCCCTGTATACCACTGCACTATGCAAGCAGTTTATGAAA	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362707	2796	6e-24	2197 - 2255	100	59 / 59	plus	ABC12537
JLOC1	JLOC1_74.1	1053	3e-24	629 - 687	100	59 / 59	plus
Harvest21	ABC12537	1761	5e-23	1689 - 1747	98	59 / 60	plus	ABC12537
Harvest35	U35_14709	612	3e-25	539 - 598	100	60 / 60	plus
Harvest35	U35_14712	1761	5e-23	1689 - 1747	98	59 / 60	plus

Contig Sequence (612 bp)

>U35_14709 612 Hv_44K_v2
AAAGAGACCATGAAGTACAAGAACTAAGCACTGTTGTGTTTCAACAGCAAGGAAGCAAAC
AGGAAGCACAACTGAGGACAAGTCCATGTAAACAATAGATCCATGATGAAGCGCCATCTT
ATGTAAAAGGGATCCAAGCATTTTACAGAATATGGGAACTTTGTCAATAGTTTCTTATTG
CAGGCACATACTGTAAGATGTTTCGCTGATATGCTATATGAACCACCATCCTTCTTGGAT
AAGCATTTACAGCGGCCGCTGCCGATGTGAACCTGCACCTTGTGGAGAGCTTTCTTAACT
CGTACTCGTCTCAACAAGGCCTTCCTGGCCCGGCCTCCAATCTGCTTGGACTTATGGGCG
TGAAGGTACCACCTCCGGACGGTAAAAAGCCGTGATATTTGTGTTTGCTAGTGTACACTC
GAGATTTCAGGAAACATAGGAGAAGAAGCGAGAATAGTGTTACGCATCGAGGTCTATATG
TTTTGCTTCCCGATCTGTTGTTGTAAAACTGCATCTCCTTACGTTCTGTGTAATCTTACT
GCTGTACTACTATACGCAAGCCCTGTATACCACTGCACTATGCAAGCAGTTTATGAAAAA
AAAAAAAAAAAA

Homology of Contig U35_14709 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None