barSeed - Barley Seed Development Database

Probe CUST_37283_PI390587928

Source Contig U35_14712

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37283_PI390587928	Hv_44K_v2	AAGTAAGACTACTATCGAGGAAACCTTTTCTCGAGCACAACACCCTAGCACCAACAGTGA	1307	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.068	1.423	1.508	1.202	0.531	0.419
Raw	126.672	277.835	244.953	321.064	48.565	40.750

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362707	2796	2e-24	1816 - 1875	100	60 / 60	plus	ABC12537
MLOC	MLOC_94.1	768	2e-24	345 - 404	100	60 / 60	minus	ABC12537
MLOC	MLOC_94.2	1208	2e-24	307 - 366	100	60 / 60	minus	ABC12537
JLOC1	JLOC1_74.2	752	8e-25	248 - 307	100	60 / 60	plus
JLOC1	JLOC1_74.1	1053	8e-25	248 - 307	100	60 / 60	plus
Harvest21	ABC12537	1761	3e-25	1308 - 1367	100	60 / 60	plus	ABC12537
Harvest35	U35_14712	1761	3e-25	1308 - 1367	100	60 / 60	plus

Contig Sequence (1761 bp)

>U35_14712 1761 Hv_44K_v2
CTCCCGCGCTGGCTCGACCCCGACACCGCCCCCAACCGCGTGTTCATCTTCCGCGGCGAG
CTCCACATCCTGCCGCCCTCCCTCTTCCCCGCCACGCCCTCGCTCCACGCCGCCCTCGCT
GCCGTCCACGACGACTCCGTCGACACCCGGGCCTCCGACGCCGTCCAGGCCGCCATACAG
CGCCGCATCGCCGGGATGCCGGAGCGGGCTGCCGAGAACCTCCACACGGCCCGCGTCACC
GTGCCGGCGCCCGTGGCCAAGGTGCTCAGGGAGGAGCCCTGCTTGATTGCGCGCGCGGTC
GAGGGGTTCTACGACCGGGACATTGACACCATGAAGCACGCCGCGAGGATGGACAAGTTC
CTCAAGGGCCCCGGTGGGGAAGGAATTGACATGGTGAGGACGTCCGTGCGGATGACCAAG
GCCATGTATGGCCAGCTCATGCAGCAGAGTTTCCAGGCGCCCAGGGGTTACCCCATGCCG
AGGAGCGAGGAGGGTCCGGACAAGTGGATGGAGGCAGAGCTGGGGATGAAGATTGCTTGC
GGGTTCGAGATGATGTACCAGGAGAGGCGGCACGAGGCGGAGGAAGGGAAGGGGAGCACC
TGGGAGGTTTACAAGAAGAGCTTGGAGGCGACCGGGTGTTTTGAGGGGTTGCTTCCTGGT
TCCAAGGAGTATAAGAGGATCATGGAGAATGCAATGCAGTATTACAAGAGCTCGAGTTCG
TTCTCGCGAACAAGGGAGATGCTAAGTGCACCAGTGCGTCGAATTGATGAAATCCTTGCG
ATGCCGTACTCGGCAGAAGATTTTCAAGGCATTAATCTTCCTCCGAGTGATGATGATTCT
TGGCTGTGTAATGGGGAGGATGAACTGAATGCAGAACTTCAGGAAAGGCAGAAGGAAATG
GAAGAGTATGCGGCTGTAAAGAAGAATAGAAAAAGTCAAAAGCAAAATGTCTCCAGCAGT
TCAAGTTCCCAGCCAAGCGAGTTTAATCTTGGAGAAATCACAGACTCCATGCAAGAGTTT
GTTCGCAAAATGTCAAGCTTCGAGGGGGCTGAAGTTCCCACAAACAGGGAAGACACGGAA
ACAGTAGACCTTGATGTCAATCTGTTCTTCAAGGCCATGGAGTCAGTGTTAGGAAGGGCT
TCACAAGAGGAAGCTGGCAATGATACCGAAGCTGATAGAAAATCCTCCTCATCTGACATG
GACTTTGATGATTCTGATTTCGAGAATGATTCTACTGAAGAAGCTGGCGAAAAGGATATG
GATGATTCTTTCATGGAATCATATTCGGATGCTTTGAATGAAGAGCTAAGTAAGACTACT
ATCGAGGAAACCTTTTCTCGAGCACAACACCCTAGCACCAACAGTGAGGGTCCCTCGAAT
GCCGCTGATAGTGACGGGGAGATGGCCCCAGTCGATGTGAACCTGAACCTTGTGGAGAGC
TTTCTTAACTCGTACTCGTCTCAACAAGGCCTTCCTGGCCCGGCCTCCAATCTGCTTGGA
CTTATGGGCGTGAAGGTACCACCTCCGGACGGTAAAAAGCCGTGATATTTGTGTTTGCTA
GTGTACACTTGAGATTTCAGGAAACATAGGAGAAGAAGCGAGAATAGTGTTACGCATCGA
GGTCTATATGTTTTGCTTCCCGATCTGTTGTTGTAAAACTGCATCTCCTTACGTTCTGTG
TAATCTTACTGCTGTACTACTATACGCAAGCCCTGTATACCACTGCACTATGCAAGCAGT
TTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14712 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34740.1	662	0.0	protein\|SGT1 protein, putative, expressed
Brachypodium v1_2	Bradi3g37260.1	658	0.0
Arabidopsis v10	AT5G65490.1	643	3e-162	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:26178003-26180309 REVERSE LENGTH=643