barSeed - Barley Seed Development Database

Probe CUST_37282_PI390587928

Source Contig U35_14713

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37282_PI390587928	Hv_44K_v2	ATACTACGGTGGAAATGAATACATTGATATGGCCGAGACGCTGTGCCAGAAACGTGCTTT	476	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249685.1	1955	2e-24	395 - 454	100	60 / 60	plus	ABC01824 ABC01828
MLOC	MLOC_59370.4	1692	2e-24	367 - 426	100	60 / 60	plus	ABC01824 ABC01828
MLOC	MLOC_59370.1	3687	7e-23	1517 - 1576	98	59 / 60	minus	ABC01824 ABC01828 ABC16764
MLOC	MLOC_59370.2	3836	7e-23	1517 - 1576	98	59 / 60	minus	ABC01824 ABC01828 ABC16764
JLOC1	JLOC1_38634.1	2347	4e-23	561 - 620	98	59 / 60	plus
Harvest21	ABC01823	544	3e-25	477 - 536	100	60 / 60	plus
Harvest21	ABC01822	990	3e-25	369 - 428	100	60 / 60	plus
Harvest21	ABC01824	1804	1e-23	386 - 445	98	59 / 60	plus	ABC01824
Harvest35	U35_14713	544	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_14714	1922	1e-23	386 - 445	98	59 / 60	plus

Contig Sequence (544 bp)

>U35_14713 544 Hv_44K_v2
GCGACACTCCAACCCCTACCCAGAGGAGAGGAGGAGGCCGCCCACCACCACCACCCACCA
TGGCCATGGCGACGGCGCTCCGCAAGCTCTCCGCCCGCGGCCAGCCCCTCTCCCGCCTCA
CGCCGCTCTACTCCATGGCGTCCCTGCCGGCGACGGAGGAGAGATCCGCAGTCACCGTAT
GTCCGATGCGCCCGCCCATTGCTCCCTGTCCGTTTGTTTGTCTGTTTGTCTGTTGCCCCG
TGCTTACCTTCTTCCCCTCCCCTCCCCTCCCCGCGTCGAGCGCAGTGGCCGAAGCAGCTC
AACGCGCCGCTGGAGGAGGTCGACCCGGAGATTGCCGACATCATCGAGCTCGAGAAGGCC
CGCCAATGGAAGGGGCTGGAGCTCATCCCGTCGGAGAACTTCACCTCCCTGTCGGTGATG
CAAGCCGTGGGATCCGTCATGACGAACAAGTACAGCGAGGGGTACCCCGGCGCCAGATAC
TACGGTGGAAATGAATACATTGATATGGCCGAGACGCTGTGCCAGAAACGTGCTTTGGAG
GCCT

Homology of Contig U35_14713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52840.1	514	2e-55	protein\|serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g09300.2	515	1e-58
Arabidopsis v10	AT4G37930.1	517	1e-51	\| Symbols: SHM1, STM, SHMT1 \| serine transhydroxymethyltransferase 1 \| chr4:17831891-17834742 REVERSE LENGTH=517