barSeed - Barley Seed Development Database

Probe CUST_37281_PI390587928

Source Contig U35_14714

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37281_PI390587928	Hv_44K_v2	GATAACACGTATGATTCGGCTTTGAGATCTTGAGCGGTTTGTGAGCTCATGTAGGACATT	1862	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.692	1.892	1.173	0.692	0.202	0.239
Raw	721.000	1306.454	694.863	659.577	66.350	85.452

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59370.1	3687	7e-23	40 - 100	98	60 / 61	minus	ABC01824 ABC01828 ABC16764
MLOC	MLOC_59370.2	3836	7e-23	40 - 100	98	60 / 61	minus	ABC01824 ABC01828 ABC16764
MLOC	AK249685.1	1955	9e-22	1871 - 1932	97	60 / 62	plus	ABC01824 ABC01828
JLOC1	JLOC1_38634.1	2347	4e-23	2037 - 2097	98	60 / 61	plus
Harvest21	ABC01828	862	5e-23	1 - 59	98	59 / 60	minus	ABC01828
Harvest35	U35_14714	1922	3e-25	1863 - 1922	100	60 / 60	plus

Contig Sequence (1922 bp)

>U35_14714 1922 Hv_44K_v2
GGCTGCAGGGAATTCGGCACGACGCTCCAACCCCTACCCAGAGGAGAGGAGGAGGCCGCC
CACCACCACCACCCACCATGGCCATGGCGACGGCGCTCCGCAAGCTCTCCGCCCGCGGTC
AGCCCCTCTCCCGACTCACGCCGCTCTACTCCATGGCGTCCCTGCCGGCGACGGAGGAGA
GATCCGCAGTCACCTGGCCGAAGCAGCTCAACGCGCCGCTGGAGGAGGTCGACCCGGAGA
TTGCCGACATCATCGAGCTCGAGAAGGCCCGCCAATGGAAGGGGCTGGAGCTCATCCCGT
CGGAGAACTTCACCTCCCTGTCGGTGATGCAGGCCGTGGGATCCGTCATGACGAACAAGT
ACAGCGAGGGGTACCCCGGCGCCAGATACTACGGTGGAAACGAATACATTGATATGGCCG
AGACGCTGTGCCAGAAACGTGCTTTGGAGGCCTTCAATTTGGACCCGGAGAAGTGGGGAG
TGAATGTGCAACCTCTGTCGGGTTCACCTGCCAACTTCCATGTATACACTGCTCTGCTGA
AGCCACATGACAGAATTATGGCCCTGGATCTTCCTCACGGTGGACATCTTTCCCATGGTT
ACCAGACTGACACGAAGAAAATCTCAGCAGTTTCAATATTCTTTGAGACAATGCCTTACA
GACTGGATGAAAGCACTGGCTTGATTGATTATGACCAGTTGGAGAAAAGTGCCGTTCTTT
TTAGGCCAAAGTTGATTGTTGCTGGTGCTAGTGCATATGCTCGCCTTTATGATTATAACC
GCATGCGGAAGATCTGTGACAAGCAGAAGGCAGTTCTTCTCGCAGACATGGCACATATCA
GTGGGCTAGTTGCTGCTGGTGTCATTCCCTCTCCTTTTGAGTATGCCGATGTGGTGACTA
CCACTACCCACAAGTCACTCCGTGGTCCACGTGGAGCCATGATCTTTTTCCGGAAGGGGG
TGAAAGAAATAAACAAACAAGGGAAGGAGGTTAAGTATGATTTTGAGGACAAAATCAATG
CTGCTGTCTTCCCTGGTCTGCAAGGTGGACCACATAACCATACTATTACTGGCCTGGCCG
TTGCGCTTAAGCAGGCAACTACTCAGGAGTACCGAGCTTATCAAGAGCAAGTTATGAGCA
ACTCTGCTAGATTTGCTGAGAGCTTGACTTCCAAAGGCTACGACATTGTCTCTGGTGGGA
CTGATAACCATTTAGTTTTGGTGAACCTCAAGAAAAAGGGAATAGATGGTTCAAGAGTGG
AGAAGGTTTTAGAAAATGTGCATATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTT
CAGCTATGGTACCCGGAGGCATCAGGATGGGAACCCCCGCGCTTACATCAAGAGGATTTG
TTGAGGAGGACTTCGCCAAGGTTGCCGAATTCTTCGATTCGGCAGTGAACTTGGCTTTGA
AGGTTAAAGCTGCAGCAGCAGGTACCAAACTGAAGGACTTTGTTGCCACTTTGCAATCCG
ACAGCAACATCCAAGCTGAAATTGCAAAGCTTCGCCACGATGTGGAGGAATATGCAAAAC
AATTCCCAACAATCGGATTCGAGAAAGAGACCATGAAGTACAAGAACTAAGCACTGCTGT
GTTTCAACAGCAAGGAAGCAAACAGGAAGCACAACTGAGGACAAGTCCATGTAAACAATA
GATCCATGATGAAGCGCCATCTTATGTAAAAGGAATCCAAGCATTTTACAGAATATGGGA
ACTTTGTCAATAGTTTCTTATTGCAGGCACATACTGTAAGATGTTTCGCTGATATGCTAT
ATGAACCACCATCCTTCTTGGATAAGCATTTACTTACACACATTTCTCCATAATGCTCCG
TGGATAACACGTATGATTCGGCTTTGAGATCTTGAGCGGTTTGTGAGCTCATGTAGGACA
TT

Homology of Contig U35_14714 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g52840.1	514	protein\|serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g09300.2	515
Arabidopsis v10	AT4G37930.1	517	\| Symbols: SHM1, STM, SHMT1 \| serine transhydroxymethyltransferase 1 \| chr4:17831891-17834742 REVERSE LENGTH=517