barSeed - Barley Seed Development Database

Probe CUST_37278_PI390587928

Source Contig U35_14717

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37278_PI390587928	Hv_44K_v2	TTGGATAAGCATTTACTTACACACATTTCTCCATGGCTCCGGGATAACACGTATATTCGG	1449	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.937	2.128	1.288	0.766	0.270	0.269
Raw	420.358	761.430	387.691	376.547	44.108	48.744

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC01827	1086	3e-25	1 - 60	100	60 / 60	minus
Harvest21	ABC01828	862	8e-21	41 - 103	95	60 / 63	minus	ABC01828
Harvest35	U35_14717	1509	3e-25	1450 - 1509	100	60 / 60	plus

Contig Sequence (1509 bp)

>U35_14717 1509 Hv_44K_v2
GGACAAGCAGAAGGCAGTTCTTCTCGCAGACATGGCACATATCAGTGGGCTAGTTGCTGC
TGGTGTCATTCCCTCTCCTTTTGAGTATGCCGATGTGGTGACTACCACTACCCACAAGTC
ACTCCGTGGTCCACGTGGAGCCATGATCTTTTTCCGGAAGGGGGTGAAAGAAATAAACAA
ACAAGGGAAGGAGGTATTGCCAGAGATACAATAAAATGAAGATACAATAAAATGATAGTA
GCATAGAGTGTTGAAGATGTTTGTTCTCTACTGAGCTTAACCTGCAGTACTCATATTACC
TGAAGAATGCAAAGGCCTAACAATCTATTTTGATATAGGTTAAGTATGATTTTGAGGACA
AAATCAATGCTGCTGTCTTCCCTGGTCTGCAAGGTGGACCACATAACCATACTATTACTG
GCCTGGCCGTTGCGCTTAAGCAGGCAACTACTCAGGAGTACCGAGCTTATCAAGAGCAAG
TTATGAGCAACTCTGCTAGATTTGCTGAGAGCTTGACTTCCAAAGGCTACGACATTGTCT
CTGGTGGGACTGATAACCATTTAGTTTTGGTGAACCTCAAGAAAAAGGGAATAGATGGTT
CAAGAGTGGAGAAGGTTTTAGAAAATGTGCATATTGCAGCAAACAAGAACACAGTTCCTG
GTGATGTTTCAGCTATGGTACCCGGAGGCATCAGGATGGGAACCCCCGCGCTTACATCAA
GAGGATTTGTTGAGGAGGACTTCGCCAAGGTTGCCGAATTCTTCGATTCGGCAGTGAACT
TGGCTTTGAAGGTTAAAGCTGCAGCAGCAGGTACCAAACTGAAGGACTTTGTTGCCACTT
TGCAATCCGACAGCAACATCCAAGCTGAAATTGCAAAGCTTCGCCACGATGTGGAGGAAT
ATGCAAAACAATTCCCAACAATCGGATTCGAGAAAGAGACCATGAAGTACAAGAACTAAG
CACTGCTGTGTTTCAACAGCAAGGTGTGCTCCGAGAAACAAATTATCTCTCCTCCAATCC
TTAAGAAACACATACAATATATCAATTCAGTTGTTATCAGGAGAAGGAATCCCCTTGACT
CTCTCGTTTGCTCCAGTCCTGTGTTGTCTGCTGTTTTAGATCTTGCGCCAAGCTTACACC
TGCAGTAGTTTTTTTGTTTTTTGTTTTGGCCCATCACCCTTTCCTCTTCGCATAAGCACA
TAGACGATGAATGCTGTTTTTCGGGCAATCACAGATATTTTGCTTTTGTTTTCCTTTTTC
TTGCAGGAAGCAAACAGGAAGCACAACTGAGGACAAGTCCATGTAAACAATAGATCCATG
ATGAAGCGCCATCTTATGTAAAAGGAATCCAAGCATTTTACAGAATATGGGAACTTTGTC
AATAGTTTCTTATTGCAGGCACATACTGTAAGATGTTTCGCTGATATGCTATATGAACCA
CCATCCTTCTTGGATAAGCATTTACTTACACACATTTCTCCATGGCTCCGGGATAACACG
TATATTCGG

Homology of Contig U35_14717 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52840.3	428	6e-119	protein\|serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g09300.2	515	5e-119
Arabidopsis v10	AT4G37930.1	517	2e-108	\| Symbols: SHM1, STM, SHMT1 \| serine transhydroxymethyltransferase 1 \| chr4:17831891-17834742 REVERSE LENGTH=517