barSeed - Barley Seed Development Database

Probe CUST_37277_PI390587928

Source Contig U35_14718

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37277_PI390587928	Hv_44K_v2	GAGAGACAATACCAAGCAGTTCCACAACTCCAAGATTAAGTTCCCCCTTGTGTACCAGAA	474	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57344.1	834	2e-24	479 - 538	100	60 / 60	plus	ABC00184 ABC00300
JLOC1	JLOC1_37150.1	1008	8e-25	543 - 602	100	60 / 60	plus
Harvest21	ABC00184	923	3e-25	475 - 534	100	60 / 60	plus	ABC00184
Harvest35	U35_14718	927	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (927 bp)

>U35_14718 927 Hv_44K_v2
GGCCGCCTCCTGCCCTCATCTCCTTAGGTTAGGTTAGGCTAGGGGCTTCGCAGAGCACGC
GGAAATGGTGGCCTTCCGGTTCCATCAGTACCAGGTGGTGGGTCGCGCGCTGCCGACGCC
CGGCGATGAGCAGCCGAAGATCTACCGCATGAAGCTCTGGGCCACCAATGAGGTCCGCGC
CAAGAGCAAGTTCTGGTATTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCA
GATGCTCGCCATCAACGAGATCTTTGAGAAGAACCCAACCACCATCAAGAACTATGGCAT
TTGGCTGCGTTACCAGAGCAGGACTGGGTACCACAACATGTACAAGGAATACCGTGACAC
CACACTGAATGGTGCCGTGGAGCAGATGTACACTGAGATGGCCTCTCGCCACCGTGTGAG
ATCCCCCTGCATTCAGATCATCAAGACCGCGACTGTCAACTTCAAGCTATGCAAGAGAGA
CAATACCAAGCAGTTCCACAACTCCAAGATTAAGTTCCCCCTTGTGTACCAGAAGGTCAG
GCCACCAACCAGGAAGCTGAAGACCACCTACAAGGCAACCAGGCCGAACTTGTTCATGTG
ATTGGGCTGTGGTGGATGCTGTTATTTTAGTAGCCAGAAGCACAAGAGTTGAAATGTTTT
CTTTGTATGTTGGATCTTCTGATGCATGAAGACAAGCGTTTTGTTTCTTATTTATCGTTT
AAAGACATGCTTGGTGAACCTTCTGATTGTGTTCTCATCAGTAATCGCATACAATCTATT
GGTACCTGATATAGAAAAAAAAAAAAAAAACGGTCAAAAAAAAAAAAAAAAATTGTGTTT
TCGTGTCTATGTTATTAACTGTGTCAGTATAGTTCGACTTACAATTGCCCATACTGGTCT
TGGAATAAATAGATGTCATTTTTTTTG

Homology of Contig U35_14718 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49030.1	179	1e-123	protein\|60S ribosomal protein L18a, putative, expressed
Brachypodium v1_2	Bradi2g16430.1	179	2e-127
Arabidopsis v10	AT2G34480.1	178	2e-116	Ribosomal protein L18ae/LX family protein \| chr2:14532916-14534161 REVERSE LENGTH=178