barSeed - Barley Seed Development Database

Probe CUST_37276_PI390587928

Source Contig U35_14719

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37276_PI390587928	Hv_44K_v2	AAACTTCTGAGTTTGAATCCTGAAATCTTCTCTTGGAAACAACATGCCATTATTCGTTTG	786	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.929	1.510	1.142	0.815	0.337	0.311
Raw	3780.550	4595.473	3046.390	3387.960	497.523	500.873

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_14719	900	3e-25	787 - 846	100	60 / 60	plus
Harvest35	U35_14721	630	1e-24	503 - 561	100	59 / 59	plus

Contig Sequence (900 bp)

>U35_14719 900 Hv_44K_v2
GGCCAGCTCCTCCTTAGGTTTCAGTCCTCCTCCGCCTCCGGTCTCGAGAGCTCGCCAGAA
TGGTCTCCCACAGGTTCCACCAGTACCAGGTGGTGGGTCGCGCGCTGCCGACCCCGGGCG
ATGAGCAGCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGT
CCAAGTTCTGGTACTTCCTGAGGAAGCTCAAGAAGGTGAAGAAGGCCAACGGCCAGATGC
TCGCCATCAACGAGATCTTTGAGAAGAACCCGACCACCATCAAGAACTACGGCATCTGGC
TGCGCTACCAGAGCAGGACCGGTTACCACAACATGTACAAGGAGTACCGCGACACGACTC
TGAACGGCGGTGTGGAGCAGATGTACACGGAGATGGCGTCGCGGCACCGCGTGCGTTCCC
CGTGCATCCAGATCATCAAGACTGCGACGGTGGACTTCAAGCTGTGCAAGAGGGACAACA
CGAAGCAGTTCCACAACTCGAAGATCAAGTTCCCGCTGGTGTACCAGAAGGTGCGCCCCC
CCACCCGCAAGCTCAAGACCACCTACAAGGCCACAAGGCCCAACCTCTTCATGTGAGCGG
GTCCCCACTGCCTACTGTTTTAGCGTGTGTAAGAGTTTGAATGTTTTGCATGTGGAAGTT
TTGGTTATGCACTTTGAGAATGTTTTCAGTTGGCACTGAGGATGCTGCTGCGTTGATGCA
ACTCTTGACTTTGTTTCGTATTAGTAATGAGCAGCAGATCCATTGTTTCGCTAAAAAAAA
AAAAAAAAACTTCTGAGTTTGAATCCTGAAATCTTCTCTTGGAAACAACATGCCATTATT
CGTTTGNGCTCACAAGTTCCTGCCATCTTCTTAAGGACCCTGTGCGTGTACGAGGATGAA

Homology of Contig U35_14719 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49030.1	179	8e-122	protein\|60S ribosomal protein L18a, putative, expressed
Brachypodium v1_2	Bradi2g16430.1	179	5e-127
Arabidopsis v10	AT2G34480.1	178	3e-114	Ribosomal protein L18ae/LX family protein \| chr2:14532916-14534161 REVERSE LENGTH=178