barSeed - Barley Seed Development Database

Probe CUST_37275_PI390587928

Source Contig U35_14720

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37275_PI390587928	Hv_44K_v2	TTAATCTGTGTAATATTTTTGGTTATATGACTGCCGGAGATGGGCCCATCACCTCCCAAA	808	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.678	1.258	1.246	0.959	0.344	0.297
Raw	609.088	708.246	625.172	741.799	95.357	90.196

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC38610	472	3e-25	15 - 74	100	60 / 60	minus	ABC38610
Harvest35	U35_14720	882	3e-25	809 - 868	100	60 / 60	plus

Contig Sequence (882 bp)

>U35_14720 882 Hv_44K_v2
CACGGCAGCAAGGACGTCGCCCCACCCCACCACCGCCGCACAGCGACCTCAGCAGCTCCG
GCGAGTATGGTAGCGTTCAGGTTCCACCAGTACCAGGTGGTCGGGAGGGGCCTGCCGACG
CCGACCTAGGAGCATCCCAGGATCTACCGCATATGAAGCTCTGGGCCACCAACGAGGTCC
GCGCCATGTCAAGTTGAAGAAGGTGAAGAAGAGCAACGGCCAGATCCTCGCCTTCAACGA
GATTTTTGAGAAGAACCCCGCGACAATCAAGAACTTTGGCATCTGGCTGCGTTACCAAAG
CAGAACTGGATACCACAACATGTGCAAGTAGTACCGTGACACCACCCTAAATGGCGCTGT
TGAGCAGATGTACACAGAGATGGCTTCCCGCCACCGTGTCAGACACCCCTGCATTCAGAT
CATCAAGACTGCCACTGTCATATTCAGCACCTGCAAGCGTGATAACACTAAGCAGTTTCA
CAAGTCAGACATCAGGTTCCCGTTGGTCTACCAGAAGGTCAGGCCACAATTTCACAAGTC
AGACATCAGGTTCCCGTTTGTCTACCAGAAGGTCAGGCCACCAACCAGGAAGCTGAAGAC
CACCTTCAAGGCCTCCAGGCCAAACTTGTTCATGTGATCCAAGTCATCCGTCCATAACCT
GTAAGCCTGTTCATTGTAAAGTACTCCCTCTGTAAACTAATATAAGATGCTAGTTCATAT
TAATATTATCCATATGCAAGATAATTCTTTTCTTGATTTTAAATAGCAGTTCCATCCAGT
GGCCTTTATGGGCTTTGACAACACTTGTTTAATCTGTGTAATATTTTTGGTTATATGACT
GCCGGAGATGGGCCCATCACCTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14720 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54870.1	179	5e-76	protein\|60S ribosomal protein L18a, putative, expressed
Brachypodium v1_2	Bradi2g50020.1	179	2e-78
Arabidopsis v10	AT1G29965.1	178	1e-69	Ribosomal protein L18ae/LX family protein \| chr1:10498458-10499373 REVERSE LENGTH=178