barSeed - Barley Seed Development Database

Probe CUST_37273_PI390587928

Source Contig U35_14722

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37273_PI390587928	Hv_44K_v2	TTGGAAACAAGATGCCATAATTCGTTTGAGCTCACAAGTTCCTGCCATCTTCTTCCGGAC	922	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.602	1.945	1.211	0.716	0.321	0.258
Raw	803.098	928.376	505.777	463.866	74.350	64.650

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_14722	1059	3e-25	923 - 982	100	60 / 60	plus

Contig Sequence (1059 bp)

>U35_14722 1059 Hv_44K_v2
TCCTCCTTAGGTTTCAGTCCTCCTCCGCCTCCGGTCTCGAGAGCTCGCCAGAATGGTCGC
CCACAGGGTAAGCTCCTCTCTCCCACCCCGCCCCGCCGTCCATCCTCCGCTCCTCTCGAT
CCGCCGCGCCGTCGATGACCCCCGCCGCCGTGGCTGACCCCTCCGTGTTTTGGCGCAGTT
CCACCAGTACCAGGTGGTGGGTCGCGCGCTGCCGACCCCGGGCGATGAGCAGCCCAAGAT
CTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGGTACTT
CCTGAGGAAGCTCAAGAAGGTGAAGAAGGCCAACGGCCAGATGCTCGCCATCAACGAGAT
CTTTGAGAAGAACCCGACCACCATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAG
GACCGGTTACCACAACATGTACAAGGAGTACCGCGACACGACCCTGAACGGCGGTGTGGA
GCAGATGTACACGGAGATGGCGTCGCGGCACCGCGTGCGTTCCCCGTGCATCCAGATCAT
CAAGACTGCGACGGTGGACTTCAAGCTGTGCAAGAGGGACAACACAAAGCAGTTCCACAA
CTCGAAGATCAAGTTCCCGCTGGTGTACCAGAAGGTCCGCCCCCCCACCCGCAAGCTCAA
GACCACCTACAAGGCGACGAGGCCCAACCTCTTCATGTGAGCAGGTCCCCACTGCCTACT
GTTTTAGCGTGTGTAAGAGTTTGAATGTTTTGCATGTGGAAGTTTTGGTTATGCACTTTG
AGAATGTTTCCAGTTGGCACTGAGGATGCTGCTGCTTTGATGCAACTCTTAACTTTGTTT
CGTATTAGTAATGAGCAGCAGTTCCATTGTTTCGCTAAAAAAAAAAAAAAAAACTTATAA
GTTTGAATCCTGAAATCTTCTCTTGGAAACAAGATGCCATAATTCGTTTGAGCTCACAAG
TTCCTGCCATCTTCTTCCGGACCCTGTGCGTGTACGAGGATGAAGTTGTTGTTGAGTTCA
TCAGNGAATATAAATTTGTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14722 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49030.1	179	1e-118	protein\|60S ribosomal protein L18a, putative, expressed
Brachypodium v1_2	Bradi2g16430.1	179	5e-123
Arabidopsis v10	AT2G34480.1	178	2e-112	Ribosomal protein L18ae/LX family protein \| chr2:14532916-14534161 REVERSE LENGTH=178