barSeed - Barley Seed Development Database

Probe CUST_37271_PI390587928

Source Contig U35_14724

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37271_PI390587928	Hv_44K_v2	CAATTTCCTTACCCTGTTTCTGAATCTGTGCAGAATAATGCTACTACTTTTTATACATCG	892	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.168	3.592	1.188	0.772	0.849	0.756
Raw	55.133	43.459	13.339	12.808	3.166	3.685

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373472	922	2e-24	836 - 895	100	60 / 60	plus	ABC00334
MLOC	MLOC_5604.1	1044	3e-21	991 - 1044	100	54 / 54	plus	ABC00334
JLOC1	JLOC1_3618.1	1410	8e-25	1085 - 1144	100	60 / 60	plus
Harvest21	ABC00334	1078	3e-25	891 - 950	100	60 / 60	plus	ABC00334
Harvest21	ABC51238	538	1e-23	131 - 190	98	59 / 60	plus
Harvest35	U35_14724	1300	3e-25	893 - 952	100	60 / 60	plus

Contig Sequence (1300 bp)

>U35_14724 1300 Hv_44K_v2
ACACCGAGCTTTCCTTCGACCCACATGCTACACATCACAAACAGCCACTGTCCTAGCTAG
CAGCTCTCACTCAGACACACACACACACACACACACCAAAGCCCAGTTGATCAGGTCACC
ATGAGCAAGGGCAAGGTTCACCACGACTGGATCCTCCGGCGGTGCTGCGGCTCCATCGCC
GCCTGCATCCTCACGCTCGCCGTCCTCGTCGGCTTCGTCGCGCTCGTCATCTACCTCGCC
CTGCACCCCTCCAAGCCCTCCTTCTACCTCCAGGACATCCAACTCCGCTCCATCGACCTC
TCCGATCCGGCTCTCTCCCTTGACGTCCAGGTGACCATCGCGTCGCGGAACCCGAACGAC
CGGGTGGGCATCTACTACAAGACCCTGCACGCCTTCACCACGTACCGCGACGAGCCGGTG
ACGGTGCCGGTGTCGCTGCCGGCGATCTACCAGGGGCACAAGGACCAGTCGGTGTGGTCG
CCGGTGATGTCCGGGGACTCGGTGCCGGTGGCGCCGTACGTGGCGGACGCCATGAAGCAG
GACATCGCCGCCGGGTACGTGCTGCTGCACGTCAAGGTGGACGGCCGCGTCAAGTGGAAG
GTCGGCAGCTGGGTCTCTGGCGGCTACCACATCTTCGTCAACTGCCCCGCGCTGCTCTCC
GCCAGCGGCGGCTCCGTCGGCGGCGCCTTCGCCATGAGCGCCACGGTGGGCGGCAAGCAG
ACCGTCTCGCTCAAGTTCACGCAGCCGTCCTACTGCACCGTCGACGTGTGAGGGACGCGG
ACGCACGTCGCCTCGCTGGGGCAACGTTCAGAGCGAACGTAGCGCTCTTAATTATTTGCA
GGAGTAAATCTTGTAGAGTAGCAACCATGATATGATAGTGTATAATTATCACCAATTTCC
TTACCCTGTTTCTGAATCTGTGCAGAATAATGCTACTACTTTTTATACATCGTATTATAA
GCTGTTCTTGTTAAAAAAAAAAAAAAAAAAACAAGAGAGTTTGCGGCCCATTTAGACCCC
GGGGAAAGGAATGGTTTAAACCCGGCTGTCCATAACAACCAATAACANNGCNGTTCCACA
ACTCCAAGATTAAGTTCCCCCTTGTGTACCAGAAGGTCAGGCCACCAACCAGGAAGCTGA
AGACCACCTACAAGGCAACCAGGCCGAACTTGTTCATGTGATTGGGCTGTGGTGGATGCT
GTTATTTTAGTAGCCAGAAGCACAAGAGTTGAAATGTTTTCTTTGTATGTTGGATCTTCT
GATGCATGAAGACAAGCGTTTTGTTTCTTATTTATCGTTT

Homology of Contig U35_14724 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33990.1	221	4e-118	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	Bradi5g09670.1	222	2e-123
Arabidopsis v10	AT5G22200.1	210	7e-53	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family \| chr5:7355688-7356871 FORWARD LENGTH=210