barSeed - Barley Seed Development Database

Probe CUST_3726_PI390587928

Source Contig U35_5223

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3726_PI390587928	Hv_44K_v2	ATATTAGGCAATTTCCTGTAAACACCGATTGAGCAATAGCCACTCACCCGTTGCCTGCAT	1490	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.045	1.331	1.408	1.195	0.527	0.610
Raw	641.752	1293.473	1179.209	1586.515	240.940	304.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360815	3267	2e-24	3113 - 3172	100	60 / 60	plus	ABC48259
MLOC	MLOC_67737.1	3056	2e-24	1921 - 1980	100	60 / 60	minus	ABC48259
MLOC	MLOC_67736.2	2971	2e-24	1673 - 1732	100	60 / 60	minus	ABC48259
JLOC1	JLOC1_44750.4	3679	8e-25	1051 - 1110	100	60 / 60	plus
JLOC1	JLOC1_44750.3	3712	8e-25	1084 - 1143	100	60 / 60	plus
JLOC1	JLOC1_44750.2	4048	8e-25	1420 - 1479	100	60 / 60	plus
JLOC1	JLOC1_44750.1	3684	8e-25	1056 - 1115	100	60 / 60	plus
Harvest21	ABC48259	556	3e-25	113 - 172	100	60 / 60	minus	ABC48259
Harvest35	U35_5223	1662	3e-25	1491 - 1550	100	60 / 60	plus

Contig Sequence (1662 bp)

>U35_5223 1662 Hv_44K_v2
GTTCTTGATGTGAAATTTCATCCAGAAGGTTTGCCTCAGCTTGTTTCTTGCTCTAATGAG
GCACCAAATGAATTATTGCTTTTCAATCTTCTTTCTGGGAGGGCTATTCAACTCAGAGGC
CACAATACTAAGATCCAGTCAACCTCATTTGCAGTTAAAGGAGCAAGCGTAGTATCTTGT
GGTTCTAATTTACTAAAGGTATGGGACTGCATAACGGGCTCTTGCCTCTACACATTGGGT
GGTGATGACCAAAATTCAGTGGGGCATACTCAAAAAATCAATGCTATGGCAGTGAATAAG
TGGCAATCCTGTCTGGTTGTCACTAGTGGCGCAAAAGGTGATGGGAAGCTTCTACTATGG
AATGCTCTGAGAGGTGAACTCGCTTCTGATCTGAATTCAAACCTGAGGTCACAGGATATG
GTGTATCCTTCGATTGATACAATGGAGTTCTGTAGTGAGAATCTTCTGGCATGTGGAAGT
GACTGTGATTATGGTGGCTCAGCTGTGGTACAGCTATGGGATATTGAGTCTCCAGAATCT
TACTTATCTTTCTCTGCAAGCGATTCGTATATTACTTCCCTTAAAATCAATCCTGCTGGC
AACACTATCATTACAGGTTCTGGTGATGGGACTATTGGTTTATTTGACATCCGTGCTTGT
TCTGCAATCAATCATTTGTCGGTGGGGTCTGGTTCTGAGGTTACATCTGTTTCATTTAGC
AACTGTGGTACCTATTTTTCTGCCTCTAGCACGTCAAATAACACTTTGGTTTGGGATACA
AGACTAGTTCCACTAAGTCATACCAGGGATGTTTTGCGAAGCAAAGACATGCGTTTTTTC
CGGCCTTTACATTGCTTGAGCCATGGCAAGCAGATGCCAACTGCAGAATATACGAGCCAA
CTACCAGGTCATGTCGACGAGGGTGATCAGGGGGTAAACGCCACACAGTGGTTGCATAAT
CAACCTGTCCTTGTTACTGCAAGCGGTGATGGCAGCGTTGGAATGTGGGATGTTACTCTA
GGCAAGCCTTGTGTCAGACATATCGTCACTCATAATCGATGTGCCAACGCTGTTGCTGTA
GCCCCCAATGATGAATACATCTCCACAGGAGGAAGCGACCAAAAAGTTGTTTTGTATCAT
AACAGAAATGGGTGTGCACATCTCAATTGGCGTCTTACATACCCTCTGCCTGGAACTGAT
TAATATGCTGCCAGAAATTGTGCAATGATTGCACTAATTCTGAGTTATCTGAAATAGGTT
GTTGATCTACAGAAGAAACTCTGTGGCTTGAAAAGGAGGTAGAGCGGTGGCTGGTATTGA
AGCCTCTGCTGGATGGACGACTGCAGCCTGTGTTGGGCCTTGATAAAAATGAATTTTCAT
TCCTCTTTACAAGTTGAGTCTGTACCTTTTTATTCTCCTGTAAAGAGAATTTATCAACCT
GACTGGTGATATTTTCTAATCTGAGTGAAACGTTAACACAGTTATGAGCCATATTAGGCA
ATTTCCTGTAAACACCGATTGAGCAATAGCCACTCACCCGTTGCCTGCATCTCTCTTCTT
CCTTTTCCTTCAGTGTTAACATGTACTGTTTCAGCATTTCCAAAAGGGGAAGCTGCAAAA
ATTAATATTAGCAGTTATATTCGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5223 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41900.1	893	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g41217.1	887	0.0
Arabidopsis v10	None