barSeed - Barley Seed Development Database

Probe CUST_37269_PI390587928

Source Contig U35_14726

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37269_PI390587928	Hv_44K_v2	ACTGCTAGCTCATACTTTGTGAAAGTCTCTTCTAATGGATTCGATCTGGTTGTGTTTTGG	656	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73576.1	879	2e-24	663 - 722	100	60 / 60	plus	ABC01368 ABC31626 ABC49927
JLOC1	JLOC1_48988.1	1063	8e-25	728 - 787	100	60 / 60	plus
Harvest21	ABC29546	447	3e-25	351 - 410	100	60 / 60	minus
Harvest21	ABC01365	1117	3e-25	976 - 1035	100	60 / 60	plus
Harvest21	ABC31626	214	1e-23	18 - 77	98	59 / 60	minus	ABC31626
Harvest35	U35_43659	512	3e-25	178 - 237	100	60 / 60	minus
Harvest35	U35_14726	814	3e-25	657 - 716	100	60 / 60	plus

Contig Sequence (814 bp)

>U35_14726 814 Hv_44K_v2
AGGGGCCGCCGCCGCTGTGTTCTCTCCCGCGCCGACGCAGCCATGGTGAAGTACTCGACG
GATCCCGCGAATCCCACCAAGTCCGCCAAGGCCATGGGCCGCGACCTGCGTGTTCATTTC
AAGAACACTAGGGAAACAGCGTTTGCCCTGAGGAAGATGCCGCTGAACAAGGCTAAGAGG
TACCTTGAGGATGTGTTGGCACACAAGCAAGCCATCCCCTTCCGGAGGTACTGCCGTGGT
GTTGGACGCACGGCCCAGGTTAAGAACCGTCAGCCAAATGGTCAGGGACGCTGGCCTGCC
AAGTCTGCTAAGTTCGTTCTGGATCTTCTAAAGAACGCAGAGAGCAATGCTGAGGTGAAA
GGTCTTGATGTGGATGCTCTCTACATTTCGCACATCCAAGTGAACCAGGCCCAGAAGCAG
CGGCGCAGGACCTACCGTGCTCATGGACGCATCAACCCCTACATGTCCAACCCATGCCAC
ATTGAGCTGATCTTGTCTGAGAAGGAAGAGCCGGTGAAGAAGGAGGCTGAGTCCCAGATT
GCCAGGAAGGCCTAGAGAAGGAAGCTCTACATCATCTGTCCACCTATTCGTTAGAGCACT
TTGTAGCATCTGGTTTGGCTGAGTGGAATTTTTGCCCTGTTATCTGTCGTCTAAATACTG
CTAGCTCATACTTTGTGAAAGTCTCTTCTAATGGATTCGATCTGGTTGTGTTTTGGAATA
AAAAAAAAAAAAAAAATATTTTTCATCGTATCTTATGGGTGTTGGTTTGCTGCTCTCAAA
AAAAAAAAAAAAACTCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g08430.1	172	3e-104	protein\|ribosomal protein L22, putative, expressed
Brachypodium v1_2	Bradi4g08667.1	172	2e-114
Arabidopsis v10	AT1G27400.1	176	5e-102	Ribosomal protein L22p/L17e family protein \| chr1:9515230-9516725 FORWARD LENGTH=176