barSeed - Barley Seed Development Database

Probe CUST_37266_PI390587928

Source Contig U35_14729

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37266_PI390587928	Hv_44K_v2	TTGTGCTGCTACGACAGTTTTGTGGTAGTACTAATTAAATTTGGACTGTATCTTGCATGT	1444	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.065	0.054	0.537	1.737	1.343	2.049
Raw	2.519	2.824	60.451	294.314	78.781	131.782

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65042.1	1708	2e-24	1582 - 1641	100	60 / 60	plus	ABC04319 ABC04320 ABC04321
JLOC1	JLOC1_42768.1	1666	8e-25	1580 - 1639	100	60 / 60	plus
Harvest21	ABC04321	1564	3e-25	1459 - 1518	100	60 / 60	plus	ABC04321
Harvest35	U35_14729	1549	3e-25	1445 - 1504	100	60 / 60	plus

Contig Sequence (1549 bp)

>U35_14729 1549 Hv_44K_v2
GGAGCGGGCGCCCTTGTTCCAATAGAACCATGGCTAAGTATCTATATGGTTCTTTTGCCA
TATCAGTCTGCTTAACCCTGTCTCTTGTTGCTGCAATAACAAGAGAACCTTCTCGCCCAG
AACCATCTCGCAAGATCAGTGAGCCTTTTGTATCATACAGCCCACAGCCACAACACTTCC
CAAACGAGGGGCTATACAAAGCCTATCTCGTTATCCAGCGCTTCAAGAGCAGAATTTCTA
GTGACCCGAAAAACATCACCAGGACCTGGTCTGGCCATGACATCTGCGGCAGGAAATCCT
ACCTTGGGTTCCGTTGCGGGACGACACCTGATCTGGCTAAGAAGCTCACGATCATGGCGG
TTGATTTCAATGATTTTGCCATGAGTGCGCCGATGCTGGAAGGCTTCATCGATCAGTTCC
CCGATCTTGTGCTTTTTCAGGCTTCCACCAATAATTTTGGCGGCGGTATCCCGCCCCTCA
GCAGCCTTCACTACCAGTACAAGCTAAGTATCCACGACGACCGCCATGATCCAATTTCCG
AGAACAAGTATCTCCTCACCATAATTATTAGAGTGGGTCCGATTGACATTGGTGAACCAG
AAGCTGTTGTCCAAACTGCCCGAAAGGGCACAAATTTTAATATTGGTAGGTCGCTCCTCC
TCAACAGCAATAGTTTATCCGGGCCACTACCTGCAAACTTGGGCTTCTCCAAGTTGAGGT
ACCTCGCCCTCGCCAACAACAAGCTCACCGGGCCAATCCCGCCATCAATCGGGAAGATGC
AAGATTCCCTCCTTGAGGTGCTCCTCCTCAACAACCAGCTCTCCGGGTGCGTCCCTCACG
AGCTCGGCATGCTCACCAAGACCACCGTCATCGACGCCGGGATGAACCAGCTCACTGGCC
CAATCCCGTCATCCTTCTCGTGCCTCAACAGCGTCGAGCAGCTCAACCTGGGCGGCAACC
GCCTGTACGGGCAGGTCCCAGACGCGCTCTGCAAGCTTGCCGGGCCGGCCGGCCGTCTCT
CCAACCTCACGCTATCGGGCAACTACTTCACTTCGGTCGGGCCAGCGTGCTCGGCACTGA
TCAAGGACGGCGTGCTGGACATGAAGTACAACTGCATCCCCGGCATGGCCAACCAGAGGG
CCCCGGCGGAGTGTGCCTCGTTCCTGAGCCAGCCGAAGACGTGCCCGGCAGCGGGCGCTC
GCGTGGTGTGCCCCGTGGTCGACGCCAAGAAGAACGCAGCGGCGCCGGTGGGGAGAGTGG
CCCCACACTACTCCAGCTATGTGACGTACGCCACTCTGCATGAGTGAGGTACCAGCGCAT
GCAGTGGGAATGACATGCCCACGTCGTCGGTATTTGCTCTTGTATTTGTTTGGTGTACAC
GTGATTGCTTTTTGTTTTCCTTGTACGTGTGGCTGTCGGGTCTAGATCAAGGCCCTTGTA
CGTATTGTGCTGCTACGACAGTTTTGTGGTAGTACTAATTAAATTTGGACTGTATCTTGC
ATGTTTCAAAAAAAAAAAAAAAAATTAACTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g40260.1	439	3e-155	protein\|uncharacterized protein At4g06744 precursor, putative, expressed
Brachypodium v1_2	Bradi3g48770.1	424	1e-177
Arabidopsis v10	AT4G06744.1	404	5e-77	Leucine-rich repeat (LRR) family protein \| chr4:4070870-4072084 REVERSE LENGTH=404