barSeed - Barley Seed Development Database

Probe CUST_37259_PI390587928

Source Contig U35_14730

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37259_PI390587928	Hv_44K_v2	GTACGTGTTGTGATGCTACTACAGTTTTGTGGTAGTAGTAATTTAATTTCGACTGTATCT	1505	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59726.1	1745	2e-24	1590 - 1649	100	60 / 60	plus	ABC04319 ABC04320 ABC04321
JLOC1	JLOC1_38883.1	1619	8e-25	1523 - 1582	100	60 / 60	plus
Harvest21	ABC04320	1536	3e-25	1452 - 1511	100	60 / 60	plus	ABC04320
Harvest21	ABC04319	566	6e-22	59 - 118	97	58 / 60	minus	ABC04319
Harvest35	U35_14730	1659	3e-25	1506 - 1565	100	60 / 60	plus
Harvest35	U35_14728	559	6e-22	449 - 508	97	58 / 60	plus

Contig Sequence (1659 bp)

>U35_14730 1659 Hv_44K_v2
GTTGCACTATATATATATATATGTCTGTTGTGCGCCACAGGTCCGCCTTCAAGGAAAGCT
AGAACTCGAAACAGCAATGGCCAATCACCTCAAGCGTCCCTTAGTCCAGCAATTCTTTCT
GCTCACTTCCGTTGCTGCAATCGTAGCAGGCCCCGCTGAGCCACACCTGTCCTATAAGAT
ACACCAGCATTCTTCCTCGTACCCACAGCCACGTGACTTCCCAAGCGAGCAGCTCTACCA
TGCATACTTCGCCATCCAGCGATTCAAGAACACCATCACCTCCGACCCCAAAAACGTAAC
CAGCACCTGGACAGGCCACGACATTTGCGCCACGACGAGCTACCTCGGCTTCAACTGCGG
GGCACCGCATGGACAAGCGAGTAACCTCACGGTGACATCAGTCATTTTCGATGGCTTTGG
TCTGTGTTCACCGATGCAACAAGATCTTGTCGACGAGCTTCCCGATCTTGCACTCTTCCA
GGCTTCCTCCAACAACTTCGGCGGCGAAGTCCCTATCCTCACCGGACTTAGCTACATGTA
CATGCTAGACGTCCACAACAAGCAGGGTGATCAATTTGAAGAAGCTAAAAGTGGAACAGC
AACAACACATTTAACTCAACTATGTCTCGGGAAGAACTTTTGCCCGGGTATACGCCTTCG
CCCCATTTTGAAGCCGAAGCACCCCCGCCATGGTGCCACGAGTGCCAAGGCACTCCTGCT
CAACAACAACCAGTTATCGGAGTCGCTTCCTGCCAACCTTGGCTTATCAAAGGTGAGCTA
CCTCGCCCTCGCCAACAACAAGCTCACCGGGCCAATCCCGCCGTCAATCGCGCAAGCGCA
AGACTCCCTCCTCGAGGTAGTCCTTCTCAACAACCAGCTCTCCGGCTGCCTCCCGAACGA
GCTCGGCATGCTCACCAAGACAACCGTCATCGACGCCGGGATGAACCAGATCACCGGCCC
GATTCCTTCATCCTTCTCGTGCCTCGGCAGCGTCGAGCAGCTCAACCTTGCCGGGAACCG
CCTGTACGGGCAGGTCCCCGACGCACTCTGCAAGCTGTCCTGGCCGGCCGGCCGCCTCGC
CAACCTCACGCTGTCGGGCAACTACTTCACGTCGGTCGGGCCGGCGTGCGCGGCACTCGT
CAAGAACGGCGTGCTGGACGTGAAGCACAACTGCATTCCCGGCTTCGCCAACCAGAGGGG
CCCAGCGGAGTGCGCCTCGTTCCTGAGCCAGCCGAAGACGTGCCCCTCGGCAAGCGCCCG
CGTGGCGTGCCCCGCCGCGGACGCCCAGTCGAACGCGGCGGCGCCGGGGGCGAGGGTGGC
CAAGGACTACTCCAGCTACGTGGTGTACGCCACTCTGCATGAGTGAGGTGACAGCGCATG
CAGTAGGGACGCCGTGCCTACGTCGTCGGTATTTGCTCTTTGTATTCTTGTATGCGTTTG
GTGTGCACGTGATTGCTGTTTGTTTACCTTGTGCGTGTGGCTGTCGGGCCTAGATCTCGG
CTCTTGTACGTGTTGTGATGCTACTACAGTTTTGTGGTAGTAGTAATTTAATTTCGACTG
TATCTTTTTCAAGGTTCAATTATAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTCCACATG
TGCTCGAGCTGCAGGTCGCGGCCGCTCTAGAGAATCCCT

Homology of Contig U35_14730 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g40260.1	439	1e-168	protein\|uncharacterized protein At4g06744 precursor, putative, expressed
Brachypodium v1_2	Bradi3g48770.1	424	1e-161
Arabidopsis v10	AT4G06744.1	404	3e-80	Leucine-rich repeat (LRR) family protein \| chr4:4070870-4072084 REVERSE LENGTH=404