barSeed - Barley Seed Development Database

Probe CUST_37258_PI390587928

Source Contig U35_14731

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37258_PI390587928	Hv_44K_v2	TGAGCTCCCGTTGCTCAACATTTGCTTTACTAATTAATAAAGAGGATCATTTTATGGTTC	581	GeneList: midnightblue MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.011	0.575	1.490	2.369	2.961
Raw	224.820	818.565	44953.100	156276.466	95606.600	135277.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72278.1	945	2e-24	358 - 417	100	60 / 60	minus	ABC00566
JLOC1	JLOC1_48069.1	907	8e-25	134 - 193	100	60 / 60	minus
Harvest21	ABC00784	352	3e-25	291 - 350	100	60 / 60	plus
Harvest21	ABC00580	661	3e-25	574 - 633	100	60 / 60	plus
Harvest21	ABC00566	667	3e-25	580 - 639	100	60 / 60	plus	ABC00566
Harvest35	U35_14732	352	3e-25	291 - 350	100	60 / 60	plus
Harvest35	U35_14731	669	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (669 bp)

>U35_14731 669 Hv_44K_v2
CGGCATTGCTTACAGCCACAGGCAAGAAACCGGACCAAGCTAGAAAGAATAATATGGCGT
CCAAGTCCAGCATCACCCCCCTCCTCTTGGCCGCCGTCCTGGCCTCCGTCTTTGCCGCCG
CCACAGCCACAGGTCAATATTGCTACGCGGGGATGGGTCTTCCGAGCAATCCGCTTGAAG
GCTGCCGGGAGTATGTCGCACAACAGACCTGCGGCGTCAGCATCGCCGGGTCGCCGGTAT
CCAGTGAGCCAGGTGACACCCCAAAGGATCGGTGCTGCCAGGAGCTTGACGAGGCTCCGC
AGCACTGCCGCTGCGAGGCGGTGCGCTACTTCATAGGGCGGAGGTCTCACCCCGATTGGA
GCGTGCTCAAGGACCTTCCCGGATGCCCCAAGGAGCCCCAGAGGGACTTCGCCAAGGTAC
TCGTTACGCCGGGGCAATGCAACGTTCTGACCGTTCACAACGCCCCATACTGCCTCGGTT
TGGACATATAAAGATAGATCCGTCGCTCATGAATGAATAAGCATGCATGCTCCGTCCATG
GATGTGTGGCATGCACATATATATATATATATATGCATATGTGAGCTCCCGTTGCTCAAC
ATTTGCTTTACTAATTAATAAAGAGGATCATTTTATGGTTCTTAAATTTCAAAAAAAAAA
AAAAAAAAA

Homology of Contig U35_14731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None