- Probe CUST_37257_PI390587928
- Source Contig U35_14732
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37257_PI390587928 | Hv_44K_v2 | GAGCTCCCGTTGCTCAACATTTGCTTTACTAATTAATAAAGAGGATCATTTTATGGTTCT | 291 | GeneList: midnightblue MasterList: Pathogenesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.013 | 0.647 | 1.354 | 2.110 | 2.691 |
| Raw | 233.738 | 937.890 | 47189.867 | 134376.166 | 78609.033 | 114332.866 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_72278.1 | 945 | 2e-24 | 357 - 416 | 100 | 60 / 60 | minus | ABC00566 |
| JLOC1 | JLOC1_48069.1 | 907 | 8e-25 | 133 - 192 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00784 | 352 | 3e-25 | 292 - 351 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00580 | 661 | 3e-25 | 575 - 634 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00566 | 667 | 3e-25 | 581 - 640 | 100 | 60 / 60 | plus | ABC00566 |
| Harvest35 | U35_14732 | 352 | 3e-25 | 292 - 351 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14731 | 669 | 3e-25 | 583 - 642 | 100 | 60 / 60 | plus |
Contig Sequence (352 bp)
>U35_14732 352 Hv_44K_v2 ACAGGCAAGAAACCGGACCAAGCTAGAAAGAATAATATGGCGTCCAAGTCCAGCATCACC CCGATTGGAGCGTGCTCAAGGACCTTCCCGGATGCCCCAAGGAGCCCCAGAGGGACTTCG CCAAGGTACTCGTTACGCCGGGGCAATGCAACGTTCTGACCGTTCACAACGCCCCATACT GCCTCGGTTTGGACATATAAAGATAGATCCGTCGCTCATGAATGAATAAGCATGCATGCT CCGTCCATGGATGTGTGGCATGCACATATATATATATATATATGCATATGTGAGCTCCCG TTGCTCAACATTTGCTTTACTAATTAATAAAGAGGATCATTTTATGGTTCTT
Homology of Contig U35_14732 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |