barSeed - Barley Seed Development Database

Probe CUST_3724_PI390587928

Source Contig U35_5225

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3724_PI390587928	Hv_44K_v2	ATTTATCTGGTTCTCGTTGAAAAAGCTTGTGGTGCATGTAGCATGCGGCCTTCGGACATT	1153	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.114	1.119	1.026	0.948	0.428	0.489
Raw	4035.103	6391.390	5054.713	7465.697	1158.849	1441.150

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364260	2002	3e-22	1921 - 1979	98	59 / 60	plus	ABC12090
MLOC	MLOC_53997.1	2144	3e-22	2035 - 2093	98	59 / 60	plus	ABC12090
MLOC	MLOC_53997.2	2095	3e-22	1912 - 1970	98	59 / 60	plus	ABC12090
JLOC1	JLOC1_34733.1	2269	1e-22	1965 - 2023	98	59 / 60	plus
Harvest21	ABC12090	1225	5e-23	1154 - 1212	98	59 / 60	plus	ABC12090
Harvest35	U35_5225	1226	3e-25	1154 - 1213	100	60 / 60	plus

Contig Sequence (1226 bp)

>U35_5225 1226 Hv_44K_v2
CTGTGATGATCGATGTATGCAGTGCAATATGTTCCTTGGCAACAGAAAATGCACACGTCC
CTTTGTTGTCTAAAACTCACGGACAGCCAGCATCACCAACAACTCTGGGAAAAGAGATGG
CAAATTTTGCAGCCAGATTATCTGATATCGGGAAGAGTTTTTCTGAGGTCAAGATACTAG
GGAAATTTGCTGGCGCTGTTGGAAATTACAATGCTGATGTAGTTGCATATCCGGAAATTG
ACTGGCCTAAGATGACAGAAGAGTTTGTCAGATCCTTAGGTTTGGAGTTCAATCCTTACG
TTACTCAGATTGAACCTCATGACTATATCTCAAAGCTCTTCAATCTATTTGTCCAGTTCA
ACATTGTCTTGACTGACTTTGACAGAGACATGTGGTCTTACATATCAGCAGGCTACTTCA
AGCAGATAGCAAAGGCTGGTGAAGTTGGATCCTCCACCATGCCTCACAAAATCAATCCCA
TCAACTTTGAAAATAGTGAAGGCAATTTTAGTGTGTCGAATGGTCTTTTATGTACTTTAA
GTATGAAGCTACCAATATCAAGGTTGCAGCGTGATCTCACAGATTCAACTGTTTTGAGAA
ACTTGGGTGTTGGATTAGGGCATTCACTCTTGGCTTACAAAGCAACAATGCAGGGAATCA
AGAAGCTAGAGGTGAACAAAGTCCGTTTGGATGAAGACTTGGAGCAAACATGGGAAGTCC
TTGCAGAGCCAATACAGACTGTGATGCGAAGGTATGGGATCCCCGAACCCTATGAGAAAC
TGAAGGAAATGACTAGAGGCCAGGCTGTGACCAAAGACAGCATACGCCAGTTCATTGAAG
GTCTTGACCTACCGGAGGATGCCCGGTCAAGTCTTTTGAAGTTAACACCACACTCTTACA
CTGGAGAGGCAGAGAATCTGGCTGCAAATATTTGGAATGTGGTTGACCTGAAATCTGGAT
TTAAGATCAAGTGAGCTTCTATCCTGGCCCACTATTTTTTTTGATGAGGACAGCGACAAT
AACATGGGGGAATATCTCATACTCCCTCTATACCTAAATAATTGTAGTTGGAGAAAACTA
GATTAGTTCTCGTCAACTATATTTATTTAGGTATGGAGGAGTAGTAGCTTAGCGTTCAAA
GATTGTCACGCTAATTTATCTGGTTCTCGTTGAAAAAGCTTGTGGTGCATGTAGCATGCG
GCCTTCGGACATTGTTCCCATTACTA

Homology of Contig U35_5225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19930.3	327	0.0	protein\|adenylosuccinate lyase, putative, expressed
Brachypodium v1_2	Bradi1g64210.1	536	0.0
Arabidopsis v10	AT1G36280.1	527	5e-150	L-Aspartase-like family protein \| chr1:13640600-13642908 FORWARD LENGTH=527