barSeed - Barley Seed Development Database

Probe CUST_37249_PI390587928

Source Contig U35_26710

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37249_PI390587928	Hv_44K_v2	GCCTGCGAGTCTTTCTTAGGGGAGATAATGAATTTGCAAGAAAATTATAATTTTGTGGAA	702	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.656	3.070	1.636	0.616	0.505	0.514
Raw	63.631	63.664	30.535	17.656	2.727	4.333

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC48423	449	3e-25	19 - 78	100	60 / 60	minus	ABC48423
Harvest35	U35_26710	780	3e-25	703 - 762	100	60 / 60	plus

Contig Sequence (780 bp)

>U35_26710 780 Hv_44K_v2
CTCCTATAGGGCGAATTGGGCCCTTCAGAACATGCTCGAGCGGCCGCTCCTGCCGCTGTG
GGGATTCTTTCGATAACCAATTTGAATGGGTACTTAGTGGTGGTGCAGTTCCATCATAGT
TTACATCAATCTATGGACCTATGGTTTCTGATGGATCATGAGAAAGGTCTCTGGGTTAAA
AAGTACAGCATAGATTATTACCGTCGGGAGGATCTTTTTACTTATCCTTTGCTGGTGTTA
GATGATGAGAGGATTGTCTTTGCAATGCAATTAACAAGGTTCCTGCACGTTTATGATCCA
AAAATAGAAACTTACACCGATCTGTGGCAGCTGGAAGATTTCAATTCCATGTGTATTTAC
ACAGGAAATCTTCTGAGTCAAGAGGTTCTGCTGACGCCAAGCATTCTACAACGTGCACCA
TCCAAATAAGCGCCACTCCTTTACCTGATGACGATGTGCGTGTGCTGCTAATATGTCGAT
GAGGCCAGTTTGCTCAGTTGTGTTGTGTGAGCGTTCTTGCGTATCTTTATACCGTCTGCA
TGGTCTACTTTGCTGTGTTTCGCTTGCATGTATGGATGGACCATGTATGACACTGTCCTG
AAGGACTCTTAATCATCTATGCATCGAATGTCATCTCCCATTTTCTTTTCTGAAAGCAAG
ACCGAGGGTTTGACCTTTGTGACTATAATTTCAAAATACATTGCCTGCGAGTCTTTCTTA
GGGGAGATAATGAATTTGCAAGAAAATTATAATTTTGTGGAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_26710 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None