barSeed - Barley Seed Development Database

Probe CUST_37246_PI390587928

Source Contig U35_26713

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37246_PI390587928	Hv_44K_v2	TACGGTCTGGAAAGAACCCCAAGAAACAAACCGCGATCTCTGGAGGCCAGTCCCGAGCTA	174	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248453.1	2898	2e-24	178 - 237	100	60 / 60	plus	ABC14341
MLOC	MLOC_18465.1	641	2e-24	349 - 408	100	60 / 60	minus	None
JLOC1	JLOC1_12778.1	623	8e-25	344 - 403	100	60 / 60	minus
Harvest35	U35_26713	468	3e-25	175 - 234	100	60 / 60	plus

Contig Sequence (468 bp)

>U35_26713 468 Hv_44K_v2
CGACCAAACTCCAACGCAAAATCACTTCCCCTCCTCCCCCTTCCCGAAGCGGCGGCCTCC
TCGCCCCTCCGGCGACCCTTCTCCGACCTCTCTGGCGGGGAAGGCTCGGCGTTTCTTGGC
TTTCCGGCGGAGAGATCCCACCTCTCTCGTCTTCCGTCCGCAAGATCACGGTATTACGGT
CTGGAAAGAACCCCAAGAAACAAACCGCGATCTCTGGAGGCCAGTCCCGAGCTACCGGCG
GTTGATTCGCGGTCGATGCGATCGCTTGACGTGGCGGGGGCGGAGAGGTCGGATCAGCAA
AACTGCAAGAAGCCGCGTCTCCAGACGGAGATGCCCCTAGCCGGCTCCATCGTCGCCGGC
AGCAGCGGCGACTGCGGAGGCATTAAAGAATCCGGTGGGTCTCTCAGCATGCGGGTGGAG
GATGTCGTGCAGCACCCCCTGCCAGGCTACNGGGCGCCGGTGGCGCTC

Homology of Contig U35_26713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None