barSeed - Barley Seed Development Database

Probe CUST_37242_PI390587928

Source Contig U35_26718

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37242_PI390587928	Hv_44K_v2	AGAATTAGGATTGAGACAGCAATACTCTTGAAGCACACCAAAGACAGCACAAGGGAGTTG	610	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.048	1.052	1.372	1.062	0.556	0.503
Raw	17.821	27.094	31.434	40.044	6.468	6.788

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374608	2248	2e-24	1503 - 1562	100	60 / 60	plus	None
MLOC	MLOC_25425.1	2069	2e-24	1184 - 1243	100	60 / 60	plus	None
MLOC	MLOC_25425.2	1983	2e-24	1098 - 1157	100	60 / 60	plus	None
JLOC1	JLOC1_17373.1	1895	8e-25	1164 - 1223	100	60 / 60	plus
Harvest21	ABC23827	670	3e-25	611 - 670	100	60 / 60	plus
Harvest35	U35_26718	670	3e-25	611 - 670	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_26718 670 Hv_44K_v2
GGCGCACTGTTGCGAGCTTTGAGTCCATTATTCTTGATCTCTATGACGAGGGACGGTTGA
ATGAGGCAGACAATTTGTTTCAGGACATGGGCAAAAAGGGGTTCAGGCCAACAATATGCA
TGTTTGAAGCCAAAATCGTTGCCTTATGCAGGGAACAGAGGGTAGATGATGCAATCAAGG
TGTTGGAGGAGGAGTTGGTCAATAACGGTCTTGTTCCCACTGTGACATCATATAACTTGT
TAATGAAGGGGCTTTGCCAGGCTATGCAAGCAATGAAGGCCCTCGGGTACCTTAAAAAGA
TGGATAAGCAGCTTGGCTGTGTTGCTCGAAAGGACACATTCTCTATCTTGATCAGTGGCT
TGTGTTCAGAAGGAAGGTTTGTCGAGGCAGCAAGAGTTATGGAGAGGATGGTGAAGAACC
ACCATCGTCCTGACAGAAACTGTTTCAGCAACGTTATTGAAGGTTTATGTGCTGTTGGCA
GAACATATGATGCATTGGTATGGCTAGAGGAGATGATTGACCATGGAGAAACACCTGATG
TATGTGTCTGGTCTTGTTTGGTTTCATCTTCTTTAGGAGTAGGAGGAAGCGTTATAGTTG
CAGAAATGTGAGAATTAGGATTGAGACAGCAATACTCTTGAAGCACACCAAAGACAGCAC
AAGGGAGTTG

Homology of Contig U35_26718 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g58500.1	501	1e-101
Arabidopsis v10	None