barSeed - Barley Seed Development Database

Probe CUST_3722_PI390587928

Source Contig U35_5227

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3722_PI390587928	Hv_44K_v2	GTTTACAGATGGAGTAGCAACTACCAGTAAGCAAAGCAAACCTTGGATTTATGTTGTAAA	745	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36669.1	964	7e-23	3 - 59	100	57 / 57	minus	None
JLOC1	JLOC1_23646.2	1017	4e-23	781 - 837	100	57 / 57	plus
JLOC1	JLOC1_23646.1	1085	4e-23	849 - 905	100	57 / 57	plus
Harvest35	U35_5227	818	3e-25	746 - 805	100	60 / 60	plus

Contig Sequence (818 bp)

>U35_5227 818 Hv_44K_v2
CGCGCCGCCCGGCTCACCCGTTCCGAATCCAGCGGAATCCCAGCGCGGCCAAGATCAGGG
CTGTCCTCAGCTGCGCCACTTCGAACTTCGAAGGCTTCCATCTCTGTCTACGTCTGGGGT
AGGGTGCGCAGGAGTAGATAGATTGATCGAGGCTCATCCCATCTCCTCTCTCGACATGGA
CAGTGATGCGTCATTTCGTTCAGCAATCGTTAATGGAGAGACCCTCAAGATGTTTGTTGG
GCAAAGAGTGCGCACAGTACTTAAAGTCCAGCACACTCAAGGTGGACTTCTTGTTGGGCA
GTCGACTGATGGACATCAGTTGACCATCAGAGGTGCCACGGAAGGCCTTATGTCAAATTA
TCTAGAGGTTATTGGGATTGCTGACAACGACCAGTCCATCACTGCTGAAAGTTCCAAAGA
TTTTGGTGAAGACTTTGATGCTGATGTGTTCAATGGGCTGTGCAAGCTTGTGGTGAACGG
CAAGGTGAAGGAAGTTGTACTGTAGAGGAAGTCATTTGCCAGATCAAGCATGCATTCTCA
GACTTTATCGGTGCCCAAATGTTACTCGAGTCACCTGCGTTCTCTGTTATCAGTCATTGG
GCACTTGTTAGGACCTATTAGGCAATAGGCACTATGAAGACAGTTGTGTTGTGCGTATGT
GTCTCCTGTAGTAGATGAGCATATTGCTGCCTCCGCTCGTAAACAAATATAAGACGTTTC
AGATCACTTAGAACGCCTTATATTTGTTTACAGATGGAGTAGCAACTACCAGTAAGCAAA
GCAAACCTTGGATTTATGTTGTAAAAAAAAAAAAAAAA

Homology of Contig U35_5227 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None