barSeed - Barley Seed Development Database

Probe CUST_37226_PI390587928

Source Contig U35_26724

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37226_PI390587928	Hv_44K_v2	TTGGTGTTGCTTGTAAAAGTTACCCCTTGTGTACTGAGATGCGCTAGCATCAATAAAAAA	1135	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.892	1.751	1.047	0.793	0.508	0.570
Raw	61.197	86.474	46.369	56.813	12.818	15.219

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41187.1	4879	6e-21	4715 - 4771	98	56 / 57	plus
Harvest35	U35_26724	1201	3e-25	1136 - 1195	100	60 / 60	plus

Contig Sequence (1201 bp)

>U35_26724 1201 Hv_44K_v2
AGATTGTCTTTAGAGGAGATCATGACTTTAACTCACTTCCGTCGCAAGAGGTCCTCCAAA
ATTTGACAAAGCTGGAATACCTGTTCATCAAATGTTGCTGGTGCTTCAAGTCATTAGGAG
GCTTACGTGCTACTACCTCTCTTTCGGAGGTTCGATTGATTTCCTGCCCTTCGTTAGACT
TGGCACATGGAGCAGGTGTATTGCCGTTGTCTCTTGAGGAGCTCTGTATACACCATTGCA
TGGTTCCTGATAATTTCTTCAGTGGTGATTTGCCGTGCCTGAAAAGACTTAGTATGTTTG
GCTGCAGAAGCTCCACATCCTTGTCTATAGGTCATCTGACCTCCCTTGTATCCTTATCAC
TGGGAATATTCCCTGATCTGTGCTTTCTTGAAGGCTTGCCTTTCCTGCAATTTCACGAAG
TACATTTGACAGATGTCCCGAATCTCGATGTGAAGTGCATTTCACAGTTTCGGGTCGAGA
AATATCTCTATATTAGCAGCCCCATAATGCTCAACCACATGCTCTCGGCTGAAGGTTTTA
CAGTTCCACCATTTCTGTCTCTTGAAAGATGCAAGGAGCCATCCGTTTCATTTGAAGAAT
CAGCAGATTTCACACCTGTTAAGTGCCTGAGGTTACGTGATTGCGAGATGAGTTCCCTAC
CAAGAAATCTGAAGTGCTTCTCCAACCTGGCGAAACTCGAAATCCACATGTGTCCCAATA
TATCATCTTTACCAGATCTGCCATCCTCCCTTCAGCACATAGTTGTGTGGAATTCTGAAG
TATTGCAGAAGAGCTGCCGAGCACCTGACGGGGAAAGCTGGCCAAAGATTGAGCATATCC
GCTGGAAGAGATTCACAGAATTTCCATAGTCACAAATATAAAGAAAAAAGGCAGTAGGAT
CAACATCTTCCCCTCCAGTGACCTCGTCTCCACCCACTGCGTGTCAAGAGTTGGAGCGCC
TCAATCTCACTTGCACTTGAGCTCTCTCCGCCGCCTTCGTCAACCGCTACATGCGTCACT
CTTCCACTATGAACGGCCCCACCAGCAGTGTTGCGACGCTTGTCTAAATCTGAATCTCTG
TTCCACAATTGTTGTCGTTAATTTGTTATATCCTGTCTTGGTGTGTTACTTTAGATTGGT
GTTGCTTGTAAAAGTTACCCCTTGTGTACTGAGATGCGCTAGCATCAATAAAAAAAAAAA
A

Homology of Contig U35_26724 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57340.1	1291	6e-118	protein\|rp1, putative, expressed
Brachypodium v1_2	Bradi2g51807.1	1289	3e-133
Arabidopsis v10	None