barSeed - Barley Seed Development Database

Probe CUST_37224_PI390587928

Source Contig U35_26726

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37224_PI390587928	Hv_44K_v2	AAATCTATAGAGAATGCAATCGCTTCATCTCCATTGGGCATCAATCCACACCTGACGGCA	563	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.851	1.318	1.758	1.635	0.733	0.702
Raw	243.308	564.449	680.850	1028.208	155.081	164.240

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373953	1329	7e-23	673 - 733	98	60 / 61	plus	None
MLOC	MLOC_54290.2	690	7e-23	49 - 109	98	60 / 61	minus	None
MLOC	MLOC_54290.1	879	7e-23	120 - 180	98	60 / 61	minus	None
JLOC1	JLOC1_34938.1	937	4e-23	631 - 691	98	60 / 61	plus
Harvest35	U35_26726	634	3e-25	564 - 623	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_26726 634 Hv_44K_v2
GGAAGTTACAAAACCCTTCTCGCCGCCACCGCCGCCGCCGCCGCCGCTTGCCGGCGGAGC
CCGTTGAACCCCGAGACCTCTATAGACCCCTAGTCGTCAGAAGCCTCATGGCGCTCCTCC
TGCGGCGAGGTGCCGCAGTCGCCGCCCGCACGCTGCGCGCCGCCGCCGCCTCCTCAGCTT
CCACCTCCGTCCACCGCCTACCGACCGCCGGATCCCTTGCCGCCGCAAGAAACCTGCCCA
CCACGCAGTTTTTCCTCCTCGAGATCCGGAGAGGCTTCGCGAAAGGGAAGAAATCGAAGA
ATGATAGTCGAGGTGATACCGTTGAAGCCGCTCCTGATATCGGGCCGACTGTCAAATCGG
CCGCGACTGCACAAATGGATACTGCTGTTGTTGCACTGTCGCGAGAGCTGAGTAAACTTC
GGACAGGGAGAGCTTCTCCTGGCATGCTTGACCACATCATGGTGGAAACTGGGGATGTTA
AAGTTGGATTGAGCCGTATTGCTGTTGTTTCTGTTCTAGATTCGCATACCCTATCAGTGA
TGCCATATGATCCTAATACAATGAAATCTATAGAGAATGCAATCGCTTCATCTCCATTGG
GCATCAATCCACACCTGACGGCAGTAGGATTATT

Homology of Contig U35_26726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41300.1	261	3e-72	protein\|ribosome recycling factor, putative, expressed
Brachypodium v1_2	Bradi5g14160.1	262	4e-79
Arabidopsis v10	None