barSeed - Barley Seed Development Database

Probe CUST_37223_PI390587928

Source Contig U35_26727

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37223_PI390587928	Hv_44K_v2	CGTATTGAGAGCCTAAAAGTTGACATCCTTGGTGAGAACCCTCCTACATTGGATAACAAT	548	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248724.1	2284	2e-24	556 - 615	100	60 / 60	plus	ABC25606
MLOC	MLOC_62946.1	1302	2e-24	828 - 887	100	60 / 60	plus	None
MLOC	MLOC_62946.2	1557	2e-24	826 - 885	100	60 / 60	plus	None
JLOC1	JLOC1_41221.1	1400	8e-25	740 - 799	100	60 / 60	plus
Harvest21	ABC25695	611	3e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_26727	611	3e-25	549 - 608	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_26727 611 Hv_44K_v2
AACCCTCTCGTGTTCCCCCTACCCCCTTCCCCGCTTCCCCTCTCCTCGCCGGCGGCAAAT
TCAAGCTCAGGAGGTCGTAACTCGGGGTTTCGGCGGGTCAGCGAAGGACCGGACCTGACA
CGGGGTCAGGCGGAATCTTCGTGATGGCGGGCACGAAGGCGGATGCGAAGGCGGATACCA
GTGGCGGCGGTGGCGGCTCTTTCAGCGAGAAGGGGCTTGCCGAGAAGCTAACTAAACTCA
ACAGCTCCGCGGCGAGCATCCAGACACTTTCACATTGGTGTGTTTTTCACCGGAAGAGAG
CCAGAAGAATCGTCGACACATGGGAGAAACAGTTTAATAATGCAACAAAGGATAAGAAAG
TGTCATTCCTGTATCTATCAAATGACATCCTGCAAAATAGCAAACGCAAGGGTGGAGAAT
TTGTGAATGAGTTCTGGAAGGTTCTTCCTGGATCACTTAAAGATGTTCATGATAGCGGGG
GAGAACATGGAAAGAAAGTGGTCGCAAGATTAATAGGGATTTGGGATGAGCGGAAGGTTT
TTGGAACCCGTATTGAGAGCCTAAAAGTTGACATCCTTGGTGAGAACCCTCCTACATTGG
ATAACAATGAT

Homology of Contig U35_26727 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g03340.1	586	7e-70	protein\|protein of unknown function, DUF618 domain containing protein, expressed
Brachypodium v1_2	Bradi4g26227.1	582	4e-90
Arabidopsis v10	None