barSeed - Barley Seed Development Database

Probe CUST_37220_PI390587928

Source Contig U35_38703

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37220_PI390587928	Hv_44K_v2	GATCATCTTCTTCTTCGAGGCGGTCCGTCGCGAGTACTACCACCCCATCCGTGTCAACTT	137	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368060	2175	2e-24	915 - 974	100	60 / 60	plus	ABC34599
MLOC	MLOC_55834.1	1540	2e-24	1154 - 1213	100	60 / 60	minus	ABC34599
JLOC1	JLOC1_36056.1	1722	8e-25	1382 - 1441	100	60 / 60	minus
Harvest21	ABC34598	559	3e-25	138 - 197	100	60 / 60	plus
Harvest35	U35_38703	559	3e-25	138 - 197	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_38703 559 Hv_44K_v2
GGCCAGGCGATCCTGTACAAGACGATCGCAACGGCGGCGCCGACCGAGTTCCTGCACGTG
AGCCCCAAGGTGAACCTGGTGCTTTGGTACATCTCCGTGGTGCTCATGTCCATCATCACG
GCCGTCTACGCATTCAAGATCATCTTCTTCTTCGAGGCGGTCCGTCGCGAGTACTACCAC
CCCATCCGTGTCAACTTCTTCTTCGCGCCGTGGATCGCATGCCTGTTCCTGGCCATGGGT
GTGCCCCCCTCGGTCACCACCCAGCTGCCTGCCTGGCTATGGTACGCGCTCATGTCTCCG
GTGCTGTGCCTGGAGCTCAAGATCTACGGGCAATGGATGTCTGGTGGGCAGAGGCGGCTG
TCCAAGGTGGCCAACCCGTCCAACCACCTGTCCGTGGTGGGCAACTTCGTTGGAGCGCTG
ATGGGCGCGTCCATGGGGCTCAAGGAAGGTCCCATCTTCTTCTTTGGCGTCGGGATGGCG
CACTACACCGTGCTGTTCGTGACGCTGTACCAGAGGCTGCCCACCAACGCGACGCTGCCC
AAGGACCTGCACCCGGTCT

Homology of Contig U35_38703 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g28840.1	626	9e-112	protein\|C4-dicarboxylate transporter/malic acid transport protein, expressed
Brachypodium v1_2	Bradi2g31957.1	610	1e-112
Arabidopsis v10	AT5G24030.1	635	1e-97	\| Symbols: SLAH3 \| SLAC1 homologue 3 \| chr5:8118618-8120993 REVERSE LENGTH=635