- Probe CUST_37219_PI390587928
- Source Contig U35_38704
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37219_PI390587928 | Hv_44K_v2 | TCCGTTTGGAATTGCGACAATCTCACTGGAAACATGAGTTTTGTTTCAAGAATCAAAAAA | 11 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.915 | 2.605 | 2.627 | 1.273 | 0.220 | 0.127 |
| Raw | 73.506 | 308.713 | 277.177 | 205.688 | 12.793 | 7.388 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK368060 | 2175 | 9e-22 | 2007 - 2061 | 100 | 55 / 55 | plus | ABC34599 |
| MLOC | MLOC_55834.1 | 1540 | 9e-22 | 67 - 121 | 100 | 55 / 55 | minus | ABC34599 |
| JLOC1 | JLOC1_36056.1 | 1722 | 5e-22 | 295 - 349 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC34599 | 510 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC34599 |
| Harvest35 | U35_38704 | 510 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (510 bp)
>U35_38704 510 Hv_44K_v2 TTTTTTTTTTTTTTTTTGATTCTTGAAACAAAACTCATGTTTCCAGTGAGATTGTCGCAA TTCCAAACGGACCTTGCTTGCTTATTCTATGGCAGTGACTGTTGTGGACAGCTGCTCTCC GTTTTGTACTGTACAGCGGAAGCGAACTTGTGTATCGCACCAAGTGGCCGATGGTTGGTG CCATCATCTTTGATTTCTAGTTCCACGCACATACTCGTATATGATATATCGTGCAGGCAC TCGTTCAAGCTTGTGGTGCTACTGCGGCAGTGGCGCCGGCCTCGATGTCCTTGCTGCAGC TGCTGCCGGAGAGGCTGTCGTCGTCCTTGCCACTCTCCTGCAGCTCCATGATAGGCTTCA TCTTGCGGTCCGTGATGGCGATGGCGATGTCGTTGGGGAAAAGGTTGTGGAACACCAAGG CGTGCACCATGGTGGTGGCGAAGAGGCCCGTCACGGTGAGCGTGGCCAGCAGCGACAGCC CTAGGCACAGCGCCTTGGTGAAGGCGTTGT
Homology of Contig U35_38704 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |