- Probe CUST_37218_PI390587928
- Source Contig U35_38705
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37218_PI390587928 | Hv_44K_v2 | ATGATCTCAATGCATATGAACAGGACCTCGAAACCTCTCTTGGAACACCTGAGGTTACCT | 396 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.228 | 2.062 | 1.143 | 0.818 | 0.401 | 0.526 |
| Raw | 46.702 | 67.958 | 32.774 | 37.684 | 5.350 | 8.766 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_3506.2 | 4016 | 2e-24 | 3344 - 3403 | 100 | 60 / 60 | plus | ABC39582 |
| MLOC | MLOC_3506.9 | 3990 | 2e-24 | 3412 - 3471 | 100 | 60 / 60 | plus | ABC39582 |
| MLOC | MLOC_3506.7 | 3325 | 2e-24 | 3234 - 3293 | 100 | 60 / 60 | plus | ABC39582 |
| MLOC | MLOC_3506.8 | 577 | 2e-24 | 486 - 545 | 100 | 60 / 60 | plus | ABC39582 |
| MLOC | MLOC_3506.1 | 4871 | 2e-24 | 3403 - 3462 | 100 | 60 / 60 | plus | ABC39582 |
| MLOC | MLOC_3506.10 | 1103 | 2e-24 | 993 - 1052 | 100 | 60 / 60 | plus | ABC39582 |
| MLOC | MLOC_3506.6 | 3346 | 2e-24 | 2977 - 3036 | 100 | 60 / 60 | plus | ABC39582 |
| MLOC | MLOC_3506.3 | 8693 | 2e-24 | 3424 - 3483 | 100 | 60 / 60 | plus | ABC39582 |
| MLOC | MLOC_3506.4 | 8522 | 2e-24 | 3424 - 3483 | 100 | 60 / 60 | plus | ABC39582 |
| MLOC | MLOC_3506.5 | 8599 | 2e-24 | 3330 - 3389 | 100 | 60 / 60 | plus | ABC39582 |
| MLOC | AK371306 | 3584 | 7e-23 | 3281 - 3340 | 98 | 59 / 60 | plus | ABC39582 |
| JLOC1 | JLOC1_2105.3 | 1904 | 8e-25 | 1657 - 1716 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2105.2 | 1298 | 8e-25 | 1051 - 1110 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2105.1 | 3493 | 8e-25 | 3246 - 3305 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC39582 | 399 | 3e-25 | 133 - 192 | 100 | 60 / 60 | minus | ABC39582 |
| Harvest21 | ABC34600 | 508 | 3e-25 | 397 - 456 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38705 | 508 | 3e-25 | 397 - 456 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25760 | 756 | 3e-25 | 392 - 451 | 100 | 60 / 60 | minus |
Contig Sequence (508 bp)
>U35_38705 508 Hv_44K_v2 GACAAAGGCCGCCCCTCGCCGCGCCTCCTCCTCCCTCCCGTCCCCTCGCCTCCCTTTTCC GCTTCTCGATTCTGCTCCGACGTCAGATCTGTCGGATGGATCCGCGGCCCCCAGACACGT CGGAGGAGCCGGGTGCCCCTTCCACCGCCCGCGCCAGCGCCGCGTCGTCCAAGGGAGCTC CCGTCACATGAGACAAGAATGGCAAAAACGGTGAACTGAAGTATGACCCCCAATCTGGCA TGAGGAATGGTGTGTTTGAATGGCAATGCTGTCAGTTCGAAAAGGTGTCTAGTCGAACAC CTGAGTTGATGCGCGACATGAGGGCCAGTGCACAGAAGATGCGTGTCCACTTCAAGGACA CTGAAGATCTCAAAGTGTGGGATGCTTATGAAACAAATGATCTCAATGCATATGAACAGG ACCTCGAAACCTCTCTTGGAACACCTGAGGTTACCTCGGACCTAGCATGGACAAGAAGGA CAGCCGTTGGAGCGGGATCAAGCATGGA
Homology of Contig U35_38705 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |