barSeed - Barley Seed Development Database

Probe CUST_37216_PI390587928

Source Contig U35_38707

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37216_PI390587928	Hv_44K_v2	AAACTATTGACGATGGGTCGAAGTGGATGAATGTGAGGAAAGGCACTTGCTGTGTATGCT	249	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375835	2619	2e-24	2017 - 2076	100	60 / 60	plus	ABC19803
MLOC	MLOC_25676.3	2269	2e-24	529 - 588	100	60 / 60	minus	ABC19803
MLOC	MLOC_25676.4	2072	2e-24	429 - 488	100	60 / 60	minus	ABC19803
MLOC	MLOC_25676.2	2151	2e-24	542 - 601	100	60 / 60	minus	ABC19803
MLOC	MLOC_25676.1	2042	2e-24	542 - 601	100	60 / 60	minus	ABC19803
JLOC1	JLOC1_17501.1	2237	8e-25	1554 - 1613	100	60 / 60	plus
Harvest21	ABC19803	725	3e-25	426 - 485	100	60 / 60	minus	ABC19803
Harvest35	U35_38707	460	3e-25	250 - 309	100	60 / 60	plus

Contig Sequence (460 bp)

>U35_38707 460 Hv_44K_v2
GTCAACCACTTTGGCATTCGGAGTTGCATCATAACAACTGGATGAGACAGAACATAAACC
GTTCGGATATTGAATGGGAAGCTATTAATGATTTAAGGGCTGATATGGCAAGACTTCAGC
AAGGTATGGGTCATATGCAAAGGATGTTGGAAGCCTGCATGGATATGCAGCTTGAGTTAC
AGCGTTCTGTTAGGCAGGAAGTTTCCGCAGCCTTGAATCGCTTCATCGGCGAGCGAGGGG
AAACCAAAGAAACTATTGACGATGGGTCGAAGTGGATGAATGTGAGGAAAGGCACTTGCT
GTGTATGCTGTGATACTCCGATCGACTCTCTTCTGTACAGATGTGGGCACATGTGCACGT
GCTCGAAATGCGCGAACGAGTTGGTTCGAAGCGGAGGGAAGTGTNCGCTGTGCCGCGCAC
CCATTATTGAGGTGATCCGAGCTTACTTCATCATGTAACT

Homology of Contig U35_38707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39690.1	659	2e-100	protein\|protein binding protein, putative, expressed
Brachypodium v1_2	Bradi4g38750.1	713	8e-101
Arabidopsis v10	AT5G04460.1	863	1e-79	RING/U-box superfamily protein \| chr5:1260009-1263695 FORWARD LENGTH=863