barSeed - Barley Seed Development Database

Probe CUST_37214_PI390587928

Source Contig U35_14751

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37214_PI390587928	Hv_44K_v2	CAGTTCTTGGAACATGGTAGTAGATACTTGTTGCCATCATTAATGAATATAATCTGGTGT	1398	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.567	1.796	1.043	0.836	0.293	0.389
Raw	1121.063	2055.932	1053.103	1361.309	160.158	236.042

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67471.4	1441	2e-24	1371 - 1430	100	60 / 60	plus	ABC02402 ABC02403
JLOC1	JLOC1_44552.1	1706	8e-25	1590 - 1649	100	60 / 60	plus
Harvest21	ABC02403	1482	3e-25	1399 - 1458	100	60 / 60	plus	ABC02403
Harvest35	U35_14751	1484	3e-25	1399 - 1458	100	60 / 60	plus

Contig Sequence (1484 bp)

>U35_14751 1484 Hv_44K_v2
CAGAAATAACCGGCGCTGAAACCACACACACACACACAAAACACAAGAAACCGCAGGAAA
AATAATACCAAACCGACCAATCATGGCTCGCCTCCGCCTCCGCCTCCGGCTGCTCCTCCT
CGTCGCCGCCGTCCTCCTCCTCCTCCACCACCCCGCCCTCTCCTCGGCTACGGAGGGGCT
GGAGGACCCCCTCATCGAGCAGGTGGTCGGGGGCGACGCGGAGAACGAGCTGGAGCTCAA
TGCGGAGGCGCACTTCGCGAGCTTCGTCCGCCGGTTCGGCAAGTCCTACAGGGACGCCGA
CGAGCACGAGCACCGCCTCTCCGTGTTCAGGGCCAACCTCCGCCGCGCTCGCCGGCACCA
GCGGCTCGACCCCTCCGCGGTCCACGGCATCACCAAGTTCTCCGACCTCACCCCCGACGA
GTTCCGGGAGCGCTTCCTCGGCCTCCGCAAATCCCGCCGGAGCTTCCTCAAAGGGATCTC
CGGGTCAGCGCACGACGCACCGGCCCTCCCCACCGACGGCCTCCCCACCGAGTTCGACTG
GCGCGAGCACGGCGCGGTCGGCCCCGTCAAGGACCAGGGCTCGTGCGGGTCGTGCTGGTC
CTTCAGCACGTCGGGGGCGCTGGAGGGTGCCAACTACCTCGCCACCGGGAAGCTGGAGGT
GCTCAGCGAGCAGCAGCTGGTCGACTGTGACCACGAGTGTGACCCGTCAGAACCACGAGC
ATGTGACGCGGGATGCAATGGTGGCTTGATGACTACAGCTTTCAGCTATCTCGCAAAAGC
TGGTGGGTTAGAAACTGAGAAGGATTACCCGTACACTGGGAGGAACAGTGCCTGCAAGTT
TGACAAATCCAAAATTGCTGCTCAAGTGAAGAATTTTAGTACTGTTGCTATTGATGAAGA
TCAAATTGCCGCTAACCTTGTGAAACACGGGCCACTTGCAATTGGAATCAATGCAGTATT
CATGCAAACGTACATTGGTGGTGTCTCATGCCCATACATCTGTGGGAGGCATCTTGATCA
TGGTGTTCCTGGTTGGCTATGGATCAGCTGGTTACGCACCGCTCCGCTTCAAGGAGAAAC
CATACTGGATCATAAAGAACTCATGGGGCGAGAACTGGGGCGAGAGCGGGTACTACAAGA
TCTGCAGGGGTCCACATGTCAAAAACAAGTGCGGTGTCGATTCCATGGTCTCCACGGTTA
CCGCCATCCATACCTCTAAGAAGGAATAGGATCTCGTAGTACATGAGTCTGGATTGTCCA
TAGATATGCTTGTGGTTGTGCCAGGACTGGGTATATTCCGTGATGCTTATTCCAGTATTG
CTTTGCAATTTGTAACCAGTAATATGTTAAACTTCTCTTGATTGCTGTAAGGTATTTTAC
TATGTATATGTTACTACGCAGTTCTTGGAACATGGTAGTAGATACTTGTTGCCATCATTA
ATGAATATAATCTGGTGTTCTGGTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g24600.1	382	1e-158	protein\|cysteine proteinase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi5g06765.1	377	0.0
Arabidopsis v10	AT4G16190.1	373	5e-121	Papain family cysteine protease \| chr4:9171512-9172877 FORWARD LENGTH=373