barSeed - Barley Seed Development Database

Probe CUST_37213_PI390587928

Source Contig U35_14752

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37213_PI390587928	Hv_44K_v2	ACGGCCCATTGTATGTAAGAGTACATTTCTACATTCAGACCACACGAGCCCGATTTTTAG	1483	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.463	1.900	1.094	0.865	0.344	0.392
Raw	262.886	562.452	274.427	357.858	47.278	59.606

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21451.1	1966	2e-24	1648 - 1707	100	60 / 60	plus	ABC04244 ABC42795
MLOC	MLOC_21451.2	1887	2e-24	1569 - 1628	100	60 / 60	plus	ABC04244 ABC42795
JLOC1	JLOC1_14881.2	2288	8e-25	1775 - 1834	100	60 / 60	plus
JLOC1	JLOC1_14881.1	1963	8e-25	1450 - 1509	100	60 / 60	plus
Harvest21	ABC04244	1914	3e-25	1484 - 1543	100	60 / 60	plus	ABC04244
Harvest21	ABC42795	434	1e-23	189 - 248	98	59 / 60	minus	ABC42795
Harvest35	U35_14752	1792	3e-25	1484 - 1543	100	60 / 60	plus

Contig Sequence (1792 bp)

>U35_14752 1792 Hv_44K_v2
AAAGAGTCCGGGCTCCTCGAATCTCTCACTAGTTTTCTTCCTTGTCTGCCTGCCCAGTGC
CCAGTCCTCCGGCTCTGGGGTTGGTGAGCTCGCTCGCTCGGGATCAGTTGGCGACTACGG
ACCCAGAGCCAGAGGTCCTTGTCCGGGAATTATTTAGGCCGCCCTTCCTCCCAGTTCCAC
GCCTTCTTAGCCCCGCCCCGCCCCGCCTGCCTTCCCTGCTTCCTCTCCTCGGATCTCCGG
CTCAAATCCGTCTCCCGAATCCCCACTTTCCAGCTTCTCGGAGGTCCCCGGAGGCCATGG
GCAGCTTCGCCAAGCTGGCCAAGAGGTGCGTGGAGACGGAGGCGCCGGTCATGGTGAAGA
TACAAGAGCTGCTTCGAGGGGCCACGGATGTGATGTCGCTTGCGCAGGGAGTTGTTTATT
GGCAACCTCCTGAGACAGCCCTGAACAAGGTCAAGGAAGTTGTATGGGAACCAGCAACCA
GTAAATATGGTGCTGATGATGGCCTTCCCGAGCTTCGAGAAGCACTTCTCGAGAAGCTTC
GCAGGGAGAATAAGCTAACCAAGTCGTCAGTTATGGTGACTGCTGGTGCAAATCAGGCTT
TTGTAAACCTGGTTCTGACCCTTTGCGATGCTGGTGATTCAGTTGTCATGTTTGCACCAT
ATTATTTCAATGCCTTCATGTCATTCCAGATGACTGGCGTCACTGATATATTAGTCGGTG
CTAGCAATCCCAAGACTCTTCATCCTGATGTTGATTGGTTGGAGAAGACGCTGAAAGAAA
ATAACCCTATCCCTAAACTTGTTACTGTTGTTAATCCGGGAAACCCATCTGGAGCTTTTA
TTCCCAAGCCTATGTTACAGAGAATTTCAGACCTGTGCAGGAATGCTGGTGCATGGCTGG
TGGTTGACAACACCTATGAGTACTTTATGTATGATGGAATGGAGCACTACTGCCTAGAGG
ATGATCACATTGTCAACCTTTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTG
TAGGATACATTGCATATCCAAGTGAGGCCGATGGTTTCCATGCGCAGCTCCTTAAGGTGC
AAGATAACATACCAATCTGTGCTTCCATCATCGGGCAGCGCCTGGCTCTGTACTCATTGG
AGGCTGGCCCAGAGTGGATCAGGGAAAGGGTGCAAGATCTCGTGATAAACCGGAAGCTGC
TTGTGGAGGCAATGTCTCCCCTTGGCGAGGATGCTGTCAAGGGTGGGGAGGGTGCCATCT
ACCTCTGGGCTAAGCTACCAGATAACTGTAAAGACGATTTTGAAGTTGTCAGATGGCTCG
CGACCAAGCACGGCGTCGCGGTGATCCCCGGGAGCGCCAGCGGAGGCCCCGGATACATCC
GCGTTTCCTTCGGAGGACTGAAGGAGGAAGGCACGAGGCTCGCCGCCGAGAGGCTAAGGA
AGGGGCTGCAAGAGCTGGTGACCGATGGAATGGTACAGTAACAACGGCCCATTGTATGTA
AGAGTACATTTCTACATTCAGACCACACGAGCCCGATTTTTAGCGACGATATGATCCTGC
TGGGATTTAGTTCATTCAGAGGAGGAAAAGCACCGTAATGTGCAAGTGCTTGTATCATAC
TACAGAATAGCCCTTGCTGGAGGTGCCTGATGGGGATGGCAATTGGTGTACTGAGAATTG
GGGCGAAATAAACAGCCATCCAGGCCGGTGTCTCTGGTGCTTCCTGCTGTTTCATATACC
CCTTTTCCCAGCAAGTATACACAAGTGAAACACGACAATTTAAGGCGATTTT

Homology of Contig U35_14752 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g08270.1	395	protein\|aminotransferase, classes I and II, domain containing protein, expressed
Brachypodium v1_2	Bradi2g04860.4	395
Arabidopsis v10	AT1G80360.1	394	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr1:30208736-30210643 REVERSE LENGTH=394