barSeed - Barley Seed Development Database

Probe CUST_37212_PI390587928

Source Contig U35_14753

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37212_PI390587928	Hv_44K_v2	TGTTTCTGTTTGTAGGCTGAAACTCTCGCTTTCTCTGTAGGCTGAAACTCTCGCTTTCTC	1499	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.474	2.154	1.113	0.755	0.377	0.297
Raw	68.621	72.214	31.879	32.725	4.992	3.292

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC52992	471	3e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_14753	1606	3e-25	1500 - 1559	100	60 / 60	plus

Contig Sequence (1606 bp)

>U35_14753 1606 Hv_44K_v2
AAGATAACCCACCCGAAGAAGCAACCAAGAAAATCCCCCCAATGGATCATCGCCTCGTGG
CCCCTCTCCTCCTCCTCGTCGGCCTCCTCCTCTCCCCGGCGCCGGCGACGGCGGCCGCGG
GGGACGAGGAGCCCCTGATCCGGCAGGTCGTGGGCGGCGCCGACCCCCTCGACAACGACC
TGGAGCTCGACTCGCAGTTCGTCGGCTTCGTGCAGCGGTTCGGGAAGACGTACCGGGACG
CGGAGGAGCACGCGCACCGGCTCTCCGTGTTCAAGGCCAACCTCCGCCGCGCGCGCCGGC
ACCAGCTGCTCGACCCGTCCGCCGAGCACGGGGTCACCAAGTTCTCCGACCTCACCCCGG
CCGAGTTCCGCCGGACCTACCTGGGGCTCAAGACGACCCGGCGATCCTTCCTGCGGGAGA
TGGCCGGGTCGGCGCACGACGCGCCCGTCCTCCCCACCGACGGCCTCCCCGAGGACTTCG
ACTGGAGGGACCACGGCGCCGTCGGCCCCGTCAAGAACCAGGGCTCGTGCGGGTCGTGCT
GGTCGTTCAGCGCCTCCGGGGCGTTGGAGGGGGCCAACTACCTGGCCTCAGGCAAGATGG
AGGTGCTCTCCGAGCAGCAGCTGGTCGACTGCGACCACGAGTGCGACCCATCAGAGCCTG
ATTCATGTGATGCTGGATGCAACGGTGGGTTGATGACTTCAGCCTTCAGCTATCTGTTGA
AATCTGGTGGCCTTGAGAGAGAAAAGGATTACCCTTACACCGGGAAGGACGGTACCTGCA
AATTTGACAAGTCCAAGATTGCTGCTTCAGTTCAGAACTACAGCGTTGTCGCTGTTGATG
AAGAACAGATTGCTGCCAACCTTGTGAAATATGGACCTTTGGCAATCGGTATCAATGCCG
CATACATGCAGACATACATCGGAGGAGTGTCATGCCCATACATCTGCGGCAGGCACCTTG
ACCACGGTGTCCTTCTCGTCGGTTACGGGGCGTCCGGCTTTGCGCCTTCCCGCTTCAAGG
AGAAGCCATACTGGATCATCAAGAACTCGTGGGGCGAGAACTGGGGGGACAAGGGGTACT
ACAAGATCTGCAGGGGCTCCAACGTGCGCAACAAGTGCGGCGTCGACTCCATGGTCTCCA
CGGTGTCCGCCACACACTCCTCGAAGGAGGAGTAGGCTCTTGTCTGATCTGTTCTGATCT
GATCGGCGGCCCTCCTGGAGTCGATCTTGGTTTCTATGTATCGCTAGAATGAAACTTTAA
TACCTAGTAGTCGCTAGGCTCCATCGTCGCTTATCAGCAGCGGAGATGCGAAGCCGCAAC
AGTATGCTTGCTGTATAACTTATGCATCTGCTCCATTTGCTACGCCCATGCATGTGATGT
TTGCCACACGCTATTTTGATGTGGCTAAAGAACTTCTGAATAATTCTGTACATAATATGT
ATTGCTTTCATCAAAAAAAAAAAAAAAAAAATATTGCTTTGCTTGTGAGGTGCAGTATTT
GTTTCTGTTTGTAGGCTGAAACTCTCGCTTTCTCTGTAGGCTGAAACTCTCGCTTTCTCA
CAGGCCTCGGTTAATTGCATTGGCCCTCTGTTCAAAAAAAAAAAAA

Homology of Contig U35_14753 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g27030.1	374	0.0	protein\|cysteine proteinase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi3g43290.1	378	0.0
Arabidopsis v10	AT4G39090.1	368	1e-177	\| Symbols: RD19, RD19A \| Papain family cysteine protease \| chr4:18215826-18217326 REVERSE LENGTH=368