barSeed - Barley Seed Development Database

Probe CUST_37211_PI390587928

Source Contig U35_14754

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37211_PI390587928	Hv_44K_v2	ATGGAATGACTTGAGTTTTTCAAGGCGTCGTACACTCGTACTTGTTCTTGCATTGCCAGC	907	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74367.1	1291	2e-24	1155 - 1214	100	60 / 60	plus	ABC04243 ABC04244 ABC08191
JLOC1	JLOC1_49554.1	1168	8e-25	995 - 1054	100	60 / 60	plus
Harvest21	ABC04243	991	3e-25	906 - 965	100	60 / 60	plus	ABC04243
Harvest35	U35_14754	1370	3e-25	908 - 967	100	60 / 60	plus

Contig Sequence (1370 bp)

>U35_14754 1370 Hv_44K_v2
AAGGGAAACCCTCACGCTCTTCCCAAGGCCGAACAGATAGCATTTCCTCGAATACATCGC
CTCGTCCTTCCTCCATGGCCACCGCGTCGCTGTCCGCTCTGTCCTCGTCGGCCGCCGCCG
CCGGCAGGCGCTTCGTCCTCTCCTCCCCGTCGCTCGCCTTCGCCTCCCGCCGCATCGCCG
CCCCAGCCCGCCTCCGCGCCGCCGTTCTTCCGGGGGAAAGGAGATTCGCGGCGTCCGCGG
CATCGGCATCCCCGGTCGTGGCCACCATCGCGGTCGGCGACAAGCTGCCCGACGCCACGC
TCTCCTACTTCGACCCAGCCGACGGCGAGCTGAAGACGGTGACGGTCGGCGACCTCACGG
CGGGGAAGAAGGTCGTGCTCTTCGCTGTCCCGGGCGCCTTCACCCCGACCTGCTCGCAGA
AGCACCTGCCGGGGTTCGTCGAGAAGGCGGGCGAGCTGCGCGCCAAGGGGGTGGACACCG
TGGCGTGCGTCTCGGTGAACGACGCCTTCGTGATGAAGGCGTGGAAGGAGAGCCTCGGCC
TCGGCGACGACGTGCTGCTGCTGTCGGACGGCAACCTCGAGCTCACCCGCGCGCTGGGCG
TGGAGATGGACCTCTCCGACAAGCCCATGGGGCTAGGCGTGCGGTCCCGCCGCTACGCGC
TCCTCGCAGACGACGGCGTCGTCAAGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCA
CCAGCAGCGCCGAGGAGATGCTCAATGCGCTCTGAGCCGCGCCTGCTCTGCTTCTTGCCT
GAGTCGTGTCTAGTAGTGAATAATAATCCGACGAACTGTTTCTCGTGTGAGCGTCCTTTG
ATGCGTCGTCATCGTGGAGAGGATTTTGTTTTCTTTCATTGAGCATTGCGTGATGTCCAT
GTGCTCGATGGAATGACTTGAGTTTTTCAAGGCGTCGTACACTCGTACTTGTTCTTGCAT
TGCCAGCGCTAAAGCCTGCGGGTTTGCTGAGATGTTTACAAAGCTTGCGTAAAAAAAAAA
AAAAATGTGCAGCGGCCGCTCATATACATAGTAAAATACCTTGCAGCAATCAAGAGAAGT
TTAACATATTACTGGTTACAAATTGCAAAGCAATACTGGAATAAGCATCACGGAATATAC
CCAGTCCTGGCACAACCACAAGCATATCTATGGACAATCCAGACTCATGTACTACGAGAT
CCTATTCCTTCTTAGAGGTATGGATGGCGGTAACCGTGGAGACCATGGAATCGACACCGC
ACTTGTTTTTGACATGTGGACCCCTGCAGATCTTGTAGTACCCGCTCTCGCCCCAGTTCT
GGCACCAGCGGCCGCTCGAGCATCATCTGGAAGGCCCAATTCGCCCTATA

Homology of Contig U35_14754 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09940.1	226	5e-82	protein\|peroxiredoxin, putative, expressed
Brachypodium v1_2	Bradi3g06750.1	229	2e-89
Arabidopsis v10	AT3G52960.1	234	2e-71	Thioredoxin superfamily protein \| chr3:19639699-19640403 FORWARD LENGTH=234