barSeed - Barley Seed Development Database

Probe CUST_37210_PI390587928

Source Contig U35_14755

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37210_PI390587928	Hv_44K_v2	CTTTGTAATGCAGATCCACAGGTCATGAATTGGTTTAGTTTATTATTGTTGTTGGCGAAA	334	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359072	2141	6e-24	1985 - 2043	100	59 / 59	plus	ABC01956 ABC01958 ABC49606 ABC49950
JLOC1	JLOC1_50553.1	2124	3e-24	1738 - 1796	100	59 / 59	plus
Harvest21	ABC01957	2134	3e-25	1945 - 2004	100	60 / 60	plus
Harvest35	U35_14755	408	3e-25	335 - 394	100	60 / 60	plus

Contig Sequence (408 bp)

>U35_14755 408 Hv_44K_v2
CCACGCGTCCGGTTGCCGAAGTTTTCACTGGTGCTCCAGGGAAGTACGTGGATCTAAAGG
AGGGTGTTCAAAGTTTCCAGGGTGTGTTGGATGGCAAGTACGATGACCTCTCGGAGCAGG
CGTTCTACATGGTTGGAGGCATCGACGAAGTCATGGCCAAGGCGGAGAAGATCGCCCGAG
ACTTGCTCACGAGCAGGAGCGTGCCAGCTCCTGCTGAGGGATCCTTGTTTTTGTTCGTTT
TTACTCCAATTTACCCGCAATAAGCAACTGCAGTGACATTGGTTTAGTCTGCACAACAGC
AACACTACTCTTGGCTTGGAAAAAACTTTGTGCCCTTTGTAATGCAGATCCACAGGTCAT
GAATTGGTTTAGTTTATTATTGTTGTTGGCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14755 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None