barSeed - Barley Seed Development Database

Probe CUST_37208_PI390587928

Source Contig U35_14757

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37208_PI390587928	Hv_44K_v2	ACATGTTCCGAGGGCTGCCTTTGCAAGCATATTATGTAGCTGTGCTATTAATTCAAAAAA	2135	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.531	1.601	1.196	0.817	0.409	0.443
Raw	5110.800	8465.663	5482.767	5960.633	1027.762	1218.891

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366123	2110	3e-21	2033 - 2086	100	54 / 54	plus	ABC01956 ABC01958 ABC49950
JLOC1	JLOC1_46999.1	2049	2e-21	1915 - 1968	100	54 / 54	plus
Harvest21	ABC01958	803	3e-25	12 - 71	100	60 / 60	minus	ABC01958
Harvest35	U35_14757	2206	3e-25	2136 - 2195	100	60 / 60	plus

Contig Sequence (2206 bp)

>U35_14757 2206 Hv_44K_v2
GGGCACCCGTCCCCCACCCCTCCTCTCCTTATTCCGCGCCCCGACCCCCGATCCCAAACC
CCTGCCACCCTTTCCCGTAGTGCGGAGCCGCCACTCCCCACCTCGCGGACCATTTCGATA
ACCTAGATCCAAGCCCTCGTTGCCGGCCATGGCTACCCGCCGGGCCATCTCGTCAGTCCT
CCGCGCCGCCTCCCGCATCCGCGCCGCCTCCCCGTCCCCGTGCCCCCGCGCGCCGCTCCA
CCGCCCGTCCCCGGCCGGCTTCCTGCTCAACCGCGCCGCCGCCTACGCGTCATCCGCCGC
GGCGGAGGCTGCTCCCGTCACGCCGCCCCCCACCTCCGATAAGCACACCGGCAGTAAGAT
TACGGATGAATTCACCGGCGCCGGCTCGGTGGGTCAGGTGTGCCAGGTCATCGGTGCCGT
GGTGGACGTGCGGTTCGACGATGGTCTCCCCCCGATCCTGACCGCGCTGGAGGTGCTCGA
CAACAGTATCCGCCTCGTGCTCGAAGTGGCACAGCATCTCGGGGAGAATGTGGTCCGCAC
CATCGCCATGGACGGGACGGAAGGGCTCGTCCGCGGCCAGAAAGTGCTCAACACCGGCTC
CCCCATCACTGTTCCTGTTGGTAGAGCGACTCTTGGGCGTATTATCAATGTTATTGGTGA
GCCAATCGATCACAAGGGAGATATAAAAACAAACAGTTACCTGCCTATCCATCGTGAAGC
CCCTGCTTTTGTTGAGCAAGCTACCGAGCAGCAAATCCTTGTTACTGGAATTAAGGTTGT
GGATCTACTCGCACCCTATCAAAGAGGTGGTAAAATTGGTCTCTTCGGTGGTGCAGGGGT
GGGCAAAACTGTCCTTATTATGGAGTTGATCAACAACGTTGCCAAGGCCCATGGTGGTTT
CTCTGTCTTTGCTGGTGTTGGAGAACGTACTCGTGAGGGTAATGACTTGTACAGGGAAAT
GATTGAGAGTGGTGTCATTAAGCTCGACGACAAGCAGAGTGAGAGCAAGTGTGCTCTTGT
GTACGGGCAAATGAATGAGCCCCCTGGTGCTCGTGCTCGTGTTGGACTGACTGGTTTGAC
TGTCGCTGAGCATTTCCGTGATGCCGAAGGACAGGATGTGCTTCTCTTCATTGATAACAT
TTTCCGTTTCACTCAGGCAAACTCTGAGGTGTCTGCTCTGCTTGGTCGTATTCCATCTGC
TGTGGGATACCAACCAACCCTTGCTACTGACCTGGGAGGGCTGCAAGAGCGGATTACCAC
CACGAAAAAGGGTTCTATTACATCCGTGCAAGCTATTTATGTGCCTGCTGATGATTTGAC
AGATCCTGCTCCTGCTACTACTTTTGCCCATCTTGATGCTACTACTGTGCTGTCACGACA
GATTTCTGAGCTCGGTATTTATCCTGCTGTCGATCCTTTGGACTCCACATCCAGAATGTT
GTCTCCCCATGTTCTTGGCCAGGAGCACTACAACACTGCTCGTGGTGTTCAGAAGGTTCT
TCAGAATTACAAGAATCTTCAAGATATTATTGCCATTTTGGGAATGGATGAGCTCAGTGA
GGATGACAAGTTAACAGTGGCTCGCGCTAGGAAAATTCAGCGGTTCCTTAGCCAACCTTT
CCATGTTGCTGAAGTTTTCACAGGCGCACCGGGAAAGTATGTTGAGCTTAAGGAGGGTGT
TCAAAGTTTCCAGGGTGTGCTGGATGGGAAATACGACGACCTTTCAGAGCAGGCATTCTA
CATGGTTGGAGGAATAGAGGAGGTCATTGCCAAGGCAGAGAAGATTGCCAAGGAGAATGC
TTGATAAGAAACTCCCTCCTTACAAGCAACGTGCAATTTTAACCTTTTTGTGGTCAACCT
GTTGTGGTTTTACTGTTTGTTAGCCAGGATATGTACGTAGAGGCAGGAGGCCCGGCCCTG
CTGATGGATGTTTCCCCCCTCCACTTTTTCCCGAATAAGGATTTGCAGTGACCTATTTAT
TTGGCTTACTGCCCTTTAAGGAAGAGAGTTCTCTTTTTGTGTGACACATGAGCGGCCAGA
CCGTGAGCTTGTTACCTCTCGGGAACTTGTTACCTGTCGGTGGAAAAAACAAACTGAATA
TTTGTCTCCCAAAAAAAAAAAAAAATACCCGCAGTACATGTTCCGAGGGCTGCCTTTGCA
AGCATATTATGTAGCTGTGCTATTAATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14757 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g49190.1	558	protein\|ATP synthase, putative, expressed
Brachypodium v1_2	Bradi2g46790.1	552
Arabidopsis v10	AT5G08680.1	559	ATP synthase alpha/beta family protein \| chr5:2821992-2824683 FORWARD LENGTH=559