barSeed - Barley Seed Development Database

Probe CUST_37205_PI390587928

Source Contig U35_2201

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37205_PI390587928	Hv_44K_v2	CTGCTGCTGCAGGAGGAACTAAGAAGTTCCATGAAATAACTTTATATATGTACTAGAAAT	270	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.514	3.480	2.009	0.634	0.156	0.068
Raw	2504.693	9078.673	4453.533	2282.034	190.335	90.719

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49138.1	269	2e-24	147 - 206	100	60 / 60	plus	ABC05564
MLOC	MLOC_53095.1	241	2e-23	136 - 193	100	58 / 58	plus	ABC05564
MLOC	AK372930	388	3e-22	295 - 353	98	58 / 59	plus	ABC05564
Harvest21	ABC05564	452	3e-25	271 - 330	100	60 / 60	plus	ABC05564
Harvest21	ABC05565	441	5e-23	278 - 336	98	58 / 59	plus
Harvest21	ABC05563	450	5e-23	291 - 349	98	58 / 59	plus
Harvest35	U35_2201	452	3e-25	271 - 330	100	60 / 60	plus
Harvest35	U35_2200	476	5e-23	291 - 349	98	58 / 59	plus

Contig Sequence (452 bp)

>U35_2201 452 Hv_44K_v2
CTAGAATAAAACCAATAGCTAACTATCTCTCATGGCACATATGAGGAACTACACACGTGC
CCTATGCTTCGTAGCTCTTATAGCCATGACCGCCACTTTCTTCCCAGGTCATGCAGCAGG
GAGTTACATAGATATATTTGAAGACTGCACAACTGTGGATTATTGTTCGCCACCAGACCG
AGCTAGTGGCAACATTGCGTGCAAGGCTTACTGTGCTGGCCGAGGTTATAACAAGGATCA
CAGCAGTTGCGTTGAAGGCAGTAGTAGCAGCTGCTGCTGCAGGAGGAACTAAGAAGTTCC
ATGAAATAACTTTATATATGTACTAGAAATATTGCTTCAATGTGAATGAATAAATTGTTT
GTGTGAATCTTGATTCATTTCATACAAAACGAACAATAAATAATTAATAATTCTTGATCT
AAAAAAAAAAAAAATAAAANAAAAAAAAAAAA

Homology of Contig U35_2201 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None