barSeed - Barley Seed Development Database

Probe CUST_371_PI415269222

Source Contig TA34852_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_371_PI415269222	Hv_44K_v2	GGCGTACCTAATAATGTAACAACAACAACAACCTAGAGTGAGTGATGTTTCAGCTGCTGC	1420	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.203	1.384	1.178	0.904	0.316	0.337
Raw	571.830	1053.209	766.175	949.768	111.540	131.049

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36358.1	1654	2e-24	1436 - 1495	100	60 / 60	plus	ABC07721 ABC37899
JLOC1	JLOC1_23398.1	1635	8e-25	1437 - 1496	100	60 / 60	plus
Harvest21	ABC07721	1488	3e-25	1412 - 1471	100	60 / 60	plus	ABC07721
Harvest35	U35_2030	1516	3e-25	1440 - 1499	100	60 / 60	plus

Contig Sequence (1480 bp)

>TA34852_4513 1480 Hv_44K_v2
CTCACCTTCCTTCCATTCGACTCCACTCCACTCTCCCACCCCACCCTCACCCTCGCCTCG
CCTTTTTAGAGAGAGAAACACGAGCTCCCCCACCGAGCCGGTAGAGAGAGAAACCCAGGT
CCAGGCCGAGCTTTCGCCGTAGCGGAGGAGGAGGAGATGGAGAGGCCGGCGCCGGTGAGG
AAGTCCCACACCAACACGGCCGATCTGCTGGCGTGGCCGGAGGGCGCGCAGCCGGAGCTC
GTCGACGGGGCCACGCCGCCGCCCAACCGCCGCCCGCACCAGCCGTCGGAGGCGATCCAC
AAGGTGGTGTTCGGCGGGCAGGTCACGGAGGAGGAGGCCGAGAGCCTCAACAAGAGGAAA
CAATGCTCCGCTCCCAAGTGGAAGGAGATGACAGGAAGTGGCATATTTGCAGCTGGAGGT
GAGGCTGAGGAAGATGAATCCGCTAACGCTTCTGCGACACCCGTCCGAACAGCTTCAAAG
AATTATCAGGCTATCAGTACCATAAGCCACATCTCCTTTGCTGAGGACGAAAGTGTTTCT
CCCAAGAAGCCAACCTCCATAGCCGAGGTGGCAAAGCAGCGTGAGCTAAGCGGCACGCTC
CAGAGCGAGGATGACAGCAAGCTGAAGAAGCAGGTATCCAATGCCAAATCAAAGGAGCTC
AGCGGGCACGGCATCTTTTCTCCTCCGGAGGACCCCAGGCCACGCAACTCGGAGAACGGC
TCCACCTCGCAGACGCCAGGGAAGAACGCACAGGTGAGCAGCATCAAATTCGGAGAGGCC
GACGACTCCGACAGCATGGTTAAGACGGCGAAGAAGATCCCGACGAAGAAGTTCAACGAC
CTGACGGGCAACAACATCTTCAAAGGCGAAGCCGCGGAGGCCCCTGGCACGGCGGAGAAG
CAGCTGAGCGACGCCAAGCTCAAGGAGATGAGCGGCAGCAACATCTTTGCGGACGGCAAG
GCGCCGTCCCGAGACTTCCTCGGTGGCATCCGCAAGCCCCCCGGTGGCGAGAGCAGCATC
GCGCTGGTCTAACAGCGACGACAACCCCTGATGGACAGGACAGAACAGACATAGCCTACA
ACATTCTTCGTTCACCCTTCGCCCCGTCGCCGTCTCTCGATCTAGGAGTGATTTCTAGGG
AGCTTTTTTTCTTCTTCGTCGTCGTTCGTTGGTGGGACTGATCTGCGATCTCGATTGAAC
TTCTGGTTTGGTTTTTTCCCGTTCCTTTTTCCTGGCGCCGGGTGCTTTCCCTTTCCTTTA
CTCGCTGTTAATTAATCCTGATGGTGTGGTTAGTGGCTGCGGCAAGCAAGCAACGATGAT
GGCTCGCTCGTTCGTTCGTTCGTGCGTCGTCTGGTCGCCTCTAAGTTAACAACAATTGGT
GTGCATTTTGCTGCGTTTGTGGTTGGGTTTGGTTGGTCGTGGCGTACCTAATAATGTAAC
AACAACAACAACCTAGAGTGAGTGATGTTTCAGCTGCTGC

Homology of Contig TA34852_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g43070.1	289	3e-158	protein\|expressed protein
Brachypodium v1_2	Bradi1g21410.1	295	3e-161
Arabidopsis v10	AT1G35780.1	286	7e-81	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:13277778-13280113 REVERSE LENGTH=286