barSeed - Barley Seed Development Database

Probe CUST_37199_PI390587928

Source Contig U35_2208

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37199_PI390587928	Hv_44K_v2	TTTTGCTCTGCAACCTGATTGGCTGGTCTGGTGAGATTAACGTGTTATTTCTTTTCAGCA	498	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.369	1.554	1.081	0.871	0.396	0.382
Raw	436.218	749.021	473.769	578.758	96.309	97.662

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_2208	558	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (558 bp)

>U35_2208 558 Hv_44K_v2
GGAAACAGAGAGAAGAGAAGAAGAGAGGAGAGGAGCCGTCGACCCCGCCGCCGCAAGCCC
TCGCCTCCGATCCCGCCGTCGCCGTCGCAGCCATGCCGTTCACCCCGGGACCCTACTCCG
GCAAGAGCACCCTCGCACTCGTGGCCAGGGTCTCCGCGGTCGGCATCGGCGTCGTCTACG
GCTCCGTCAAGCTCGGCATCCTCAAGATGACCAAGCCCAAGGAGGAAGCAGCTGCTCACC
ACTGAGGACAAGTAGCTCCAGCGGGTTGACGCCGTAGATTCAACAATGTACCTTCTGTAC
GCGCATTCGGATCTGTGATTTGTGTATGAAACCCAAAAAAACCCAAGCCCATGTGGGAGC
TGAACCTGATTTTTTTTTTTTTTTTTTGCTTGTGGAAAATAATATCCTCGGCTGAATCGA
CTTGAAATCAGGAAAGAGTGAAAATTAATATCTTTTAAAAAAAAAAAAAAAAACTCTGTT
TTTGTTGTGCCATCTATATTTTGCTCTGCAACCTGATTGGCTGGTCTGGTGAGATTAACG
TGTTATTTCTTTTCAGCA

Homology of Contig U35_2208 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None