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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37198_PI390587928Hv_44K_v2GGGTTACATTTCTTGTGCACAGTCTCACAATCAGCACATCTGAAATTTTGATAATATTGT2599GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.9771.6201.0590.8020.3180.385
Raw 3269.7934248.7872393.6502945.963396.451525.299



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_56261.234717e-2325 - 859860 / 61minus ABC05380
MLOCMLOC_56261.332957e-2325 - 859860 / 61minus ABC05380
MLOCMLOC_56261.135757e-2365 - 1259860 / 61minus ABC05380
JLOC1JLOC1_36377.136604e-233451 - 35119860 / 61plus
Harvest21ABC0538126793e-252600 - 265910060 / 60plus
Harvest35U35_220926793e-252600 - 265910060 / 60plus



Contig Sequence (2679 bp)

>U35_2209 2679 Hv_44K_v2
GGAAAGATGGAGGAACAAACGGAAGAGAAACAAGACGAAAGCAAATCACAGGACGACACA
AAACACACTGAAAATGGGGCCGTAGTAATAGCTGATGGTGCTCCGCAAAAGAGCCAGGAT
AGTTCAAGTAAAACAAAGCAGGGAAAATCTGTTCTTATTAAGCAAGAGGAACGTGAAACT
GGAGTTGTCAGTACGAAGGTCCTTTCACGCTATAAAAATGCAATGGGAGGTATCTGGGCG
GTGTCCGTCCTCTTCGTGTGTTATGCACTGACTGAAACTCTACGGATTTCAAGTAGCACA
TGGTTGAGCATTTGGACTGATGAGGGTTCTCTGAAAATCCATGGCCCTGGTTACTACAAC
TTAATCTATGGCATTCTTTCTTTTGGGCAGGTTCTAGTCACTCTCACGAATTCTTACTGG
CTGATCACGTCAAGTCTTCGAGCAGCCAAGAAGTTGCATGACTACATGCTCCGGTCTATA
TTAAGAGCTCCCATGGTATTTTTTCACACCAATCCACTTGGACGGATCATCAACAGATTT
TCGAAGGATTTGGGTGACATTGACAGGAATCTTGCTGTCTTCGTCAACATGTTTATGGCA
CAAATATCTCAGTTGCTCTCAACATTTATTCTCATCGGTGTTGTCAGCACTATGTCTCTT
TGGGCTATCATGCCGCTTCTGATTTTATTTTATGCAGCCTACCTTTATTACCAGACCACA
TCACGCGAGGTAAAGCGCATGGATTCTATTACCAGGTCTCCTGTGTATGCTCAATTTTCA
GAGGCATTAAATGGTCTGTCCACAATCCGTGCCTACAAAGCCTATGATAGAATGTCAAAC
ATCAATGGGAAATCAATGGACAACAACATCAGATTCACACTCGTGAACATGAGTTCAAAT
AGGTGGCTAGCCATCCGGCTGGAAACATTGGGTGGCATCATGATATGGTTCACGGCAACA
TTTGCAGTCATGCAAAACCAACGAGCAGAGAATCAGAAGGCCTTTGCTTCCACGATGGGT
CTTCTTCTTACTTACACCCTCAATATCACCAATCTGCTCACAGCTGTTCTTCGTCTTGCT
AGTCTTGCTGAAAATAGTATGAATGCTGTTGAACGCGTGGGGACATACATTGAGTTGCCT
TCTGAGGCTCCCCCTGTCATTGAGGATAACAGGCCACCTCCTGGTTGGCCATCATCTGGT
ATCATCAAGTTTGAAGATGTTGTGCTTCGGTACCGACCAGAACTTCCACCTGTTCTTCAT
GGAATATCATTCATTATTAATGGAAGTGAGAAGGTTGGAATAGTTGGCAGAACAGGTGCT
GGTAAATCTAGCATGCTTAATGCTTTGTTCCGAATCGTGGAACTGGAGCGTGGGAGAATA
TTGATTGATGATTGTGACACTAAAAAGTTCGGAATTTGGGATCTGCGGAAAGTGTTAGGA
ATAATACCACAGGCACCAGTCCTGTTTTCAGGTACCATTCGATTTAATCTGGATCCTTTC
AGCGAGCATAATGATGCAGATCTCTGGGAGGCTCTTGAAAGGGCTCATCTAAAAGATGTC
ATAAGGAGGAATGCTCTAGGACTAGATGCTGAGGTTTCTGAGGCTGGTGAAAATTTTAGC
GTTGGACAGCGGCAGCTGCTGAGTTTAGCTCGTGCATTGCTACGAAGGGCGAAGATACTT
GTTCTTGATGAGGCAACAGCAGCAGTTGATGTTCGAACTGATGCTCTTATACAGAAGACA
ATCAGAGAAGAATTCAAGAGTTGTACAATGCTTATAATTGCTCACCGCTTGAACACTGTC
ATCGACTGTGACAGGTTGCTTATTCTAAGTTCTGGGAAGATTTCGGAATTTGACACTCCC
GAGAATCTTCTGAGCAATGAGGACGGTGCTTTCTCCAAGATGGTTCAGAGTACAGGACCT
AGCAATGCAGAATATCTTAAGTCTCTTGTGCTTGGGAATGGTGAAGAGAGGCTGCGAAAG
GAAGAAAGTAAGTTGCAAGATATTCAGAGGAAATGGGCTGCGTCGAACCGATGGGCTGTT
GCTGCCCAGTTTGCGCTTGCTGCTAGCCTCGCGTCATCCCACAGTGACCTTCTCTCGTTG
GAGGTTGCCGAGGGAAACAGCATCCTCAGGAAAACAAAGGACGCAGTAATCACCCTGCAG
AGCGTCCTTGAAGGGAAGCACAACACCGAAATCGAGGAGTCACTCACTGAGTATCAGGTT
CCACCTGATAGGTGGTGGTCGTCACTTTACAAAGTCATCGAAGGCCTCGCCACGATGAGC
AAACTGGGTCGCAACCGTCGGCAACCTGGTTACAGTTTTGAAAACCACGGGTCTATTGAC
TGGGATCAAATTTAGGTGTTGAACACTGGCATTGCAATGCTACTGAATCCCTGAAACCGC
TGTCTGGAGGCGTGCACTTAATAACGTTCGGTTTAATTTCTACAGTCTTGTAGTACATTC
TTGTACATTTTATTATCGCCAGTACATTGACGTGCAAGTGTGGAGTTACTCAGTAGATCC
GCCGACACCTATCTCAAGGCGAATAACAAGGGGATTTTGTAGCAGTAGCAGTCTTGTAAT
GTTGACATGTTGTCCGCATGGGTTACATTTCTTGTGCACAGTCTCACAATCAGCACATCT
GAAATTTTGATAATATTGTTGTAAAAAAAAAAAAAAAAA



Homology of Contig U35_2209 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g52900.116290.0protein|ABC transporter family protein, putative, expressed
Brachypodium v1_2Bradi5g22077.116300.0
Arabidopsis v10AT2G34660.116230.0| Symbols: ATMRP2, EST4, MRP2, ABCC2, AtABCC2 | multidrug resistance-associated protein 2 | chr2:14603267-14612387 FORWARD LENGTH=1623