barSeed - Barley Seed Development Database

Probe CUST_37190_PI390587928

Source Contig U35_2217

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37190_PI390587928	Hv_44K_v2	CGGTTGAGTTGAACAATGGTGCATCAGTTTTGGTAATGAGATTGTTATGTTTTTGTGAAA	2246	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.234	2.055	1.243	0.670	0.269	0.298
Raw	20695.167	28650.300	15766.467	13149.993	1881.660	2267.567

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7532.1	3155	7e-23	33 - 89	100	57 / 57	minus	ABC06217
JLOC1	JLOC1_4972.1	1486	4e-23	1362 - 1418	100	57 / 57	plus
Harvest21	ABC06217	2317	6e-22	2247 - 2300	100	54 / 54	plus	ABC06217
Harvest35	U35_2217	2320	3e-25	2247 - 2306	100	60 / 60	plus

Contig Sequence (2320 bp)

>U35_2217 2320 Hv_44K_v2
TTGCAGGTTCAATACCACCAGAAGGTGCTGCCTGCATGTGGCTAACGCCATGGACGATTT
TCAGAATCCGCGGGTGCAGGCACATGCTGCGTCTGCAATCTTGAATTTCAGTGAGAATTG
CACGCCTGAAATTCTGACACCGTACCTGGATGGAATTGTTAGCAAATTACTTGTTCTTCT
CCAGAATGGTAAGCAAATGGTGCAAGAGGGAGCATTGACAGCTTTAGCATCAGTAGCTGA
TTCATCACAGGACCACTTCAAGAAATACTATGATGCTGTTATGCCGTACCTGAAAGCTAT
TTTAATGAATGCAACTGACAAGTCTAATAGGATGCTCCGTGCCAAGTCCATGGAGTGTAT
AAGTCTTGTTGGAATGGCTGTAGGCAAGGATAAGTTTAGGGATGATGCCAAGCAGGTCAT
GGAAGTGCTTATGGCTTTGCAAGGAACTCCGATGGAAACAGATGATCCGATAACCAGCTA
CATGTTGCAGGCTTGGGCCAGGCTATGCAAATGTCTTGGACAGGATTTTCTTCCTTACAT
GCATGTTGTTATGCCACCACTGCTTCAGTCTGCTCAGCTGAAGCCTGATGTTACAATTAC
TTCAGCCGAATCAGATGATGAAATAGAATCAGATGATGATAGCATTGAAACAATCACACT
TGGTGACAAAAGAATTGGAATTCGAACTAGTGTGCTGGAAGAGAAAGCAACAGCTTGCAA
CATGCTGTGTTGCTACGCTGATGAGCTCAAGGAGGGTTTCTTCCCATGGATTGATCAGGT
TGCTCCTACATTGGTCCCTCTGCTTAAGTTTTACTTCCACGAAGAAGTGAGAAGAGCTGC
TGTTGCAGCTATGCCTGAACTGTTACGTTCGGCAAAATTGGCTGTTGAGAAGGGCCAGGC
TCCAGGACGCGATGAGTCTTACGTTAAACAATTGTCTGATTTCATAATTCCAGCTCTGGT
TGAAGCGCTGCACAAGGAGCCGGAAACCGAAATGTGCTCATCCATGCTGGATTCCTTAAA
TGAGTGTATGCAGCTTTCTGGATGTCTTCTTGATGAGAATCAAGTAAGGGCTATTTCGGA
TGAGATTAAGAATGTTATTATAGCCAGTGCAACCAGGAAAAGAGACAGATCAGAGAGAAC
AAAAGCCGAAGATTTTGATGCTGATGAAGGAGAACTACTCAAAGAAGAGAATGAGCAGGA
GGAGGAAGTGTTTGATCAGGTCGGCGAGTGCCTGGGAACTTTGATTAAAACCTTTAAAGC
TTCTTTCTTGCCGTTCTTTGATGAGCTATCTGTGTACGTTACACCAATGCTGGGAAAGGA
CAAGACAGCTGAGGAGAGAAGGATAGCTATCTGCATTTTTGACGACATTGCAGAGCAATG
TCGTGAGTCTGCTCTGAAGTATTATGATACCTATGTTCCTTTTCTGTTGGAGGCATCCAA
TGATGATAACTCAGATGTTCGGCAGGCTGCTGTTTACGGCCTGGGAGTATGTGCTGAGTT
TGGTGGCCATACTTTCCGTCCTTTAGTTGGAGAGGCCCTGTCAAAGCTGAACAACGTTAT
CAGACATCCAGAAGCACAACATGCAGATAATATTATGGCATATGATAATGCTGTTTCAGC
ACTTGGGAAAATATGTCAATTTCATCGCGATGGGATTGATGCGGCTCAGGTCATTCCAGC
ATGGCTTGGCTGCTTGCCTATAAAAGATGACAAGATTGAAGCAAAAGTCGTGCATGATCA
GCTTTGTTCAATGGTGGAGAGATCGGATGCACTGGTTCTTGGACCTCACAGTCAGTATCT
TCCTAAAATAGTTTCTATTTTTGCTGAGGTTCTGTGCAATGGAAAGGAGCTTGCAACAGA
TGAAACTACCACCCGGATGATCAATGTTCTGAAGCGGTTTCAGCAGACACTGCCACCTGA
TTTTCTTGCGTCAACATTTTCCACCTTGCAACCACAGCAGCAGCTCATGCTACAGTCCAT
CCTATCCACATAGTTCTCTTCTGTTTTGTGGCTGCAAGGTTGAGGCTTGCTTTTCTTTCC
ATAATTCGTCATTGGTACTGTCAACCAATTTTTTGTGTTGAATCTTATTCTGGGGGAGTT
CATTTGTGCATGCATTGGTCGCTTCAAGGGATTGGTGGTCGCCATTCCATATGGTTTTTG
ATGTAGAGTGTATATTATCTTGTATTCAAATATGATTTTGGGGCTTGCTGCGTCAAAGAT
GTAAGGGAAATGGCGAAAATTGTTGTCGGTTGAGTTGAACAATGGTGCATCAGTTTTGGT
AATGAGATTGTTATGTTTTTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2217 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g38760.1	1124	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g23750.1	1120
Arabidopsis v10	AT5G19820.1	1116	\| Symbols: emb2734 \| ARM repeat superfamily protein \| chr5:6695731-6701247 REVERSE LENGTH=1116