barSeed - Barley Seed Development Database

Probe CUST_37187_PI390587928

Source Contig U35_2220

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37187_PI390587928	Hv_44K_v2	GCTTGTACAAGAATCCATGAGACACTGATCCATTTTGTGATTATCACTTGATTTGATTTG	2536	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360855	3588	2e-24	3518 - 3577	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
MLOC	MLOC_42911.7	2380	2e-24	2300 - 2359	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
MLOC	MLOC_42911.8	2275	2e-24	2197 - 2256	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
MLOC	MLOC_42911.6	2314	2e-24	2223 - 2282	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
MLOC	MLOC_42911.5	2572	2e-24	2511 - 2570	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
MLOC	MLOC_42911.4	2764	2e-24	2703 - 2762	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
MLOC	MLOC_42911.2	3057	2e-24	2996 - 3055	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
JLOC1	JLOC1_27734.1	2995	8e-25	2902 - 2961	100	60 / 60	plus
Harvest21	ABC05364	2627	3e-25	2537 - 2596	100	60 / 60	plus	ABC05364
Harvest35	U35_2220	2627	3e-25	2537 - 2596	100	60 / 60	plus

Contig Sequence (2627 bp)

>U35_2220 2627 Hv_44K_v2
ACGAGCTCAGGCTAAGGAAATGTTAAAGAAACAAGCCCGTGCTAAGATAAAAGGTCGTAC
CGGGCAAAACCCATCTGAAATAGCAGATGATGAAGATCAAAGGAGCCCTCCACCTAACAG
TGAGCGTTCATCAACTGAGAAGGAAAACTCTGAAGTCAAAGAGAAATTAACTGAGAAGAA
AAACTCTGAAATCAAAGAGAATGGAACCGTTCTGGAGCATGTGAAAGTGAAATTGGAAGA
GGAAAAACCAAGTAACACTGTGGTCCACATGCCTCAAGATGATTATACTGAAGAGAACAG
ATTTGAGGAGGGGTGGCACGAGGCTGTTCCAAAGGGACGTACCATGGGGAACCGCAAAAC
TGGTGCAAGTGTGAGGAGGCCAAACCTGTCAAAGATCAGTACAAATGCCAGCAATAATAG
TGAGAATGGAAGATACAAAGGCAGAGTTCCATCCAACTCTTCCCCTCGAGTTTCACCTAA
TGAGACTGCAGCTTCTGTTGCTTCCAGCCCTCTTGCAAAGAAATTGGCAAAGAGTTCGAG
CTTCAATTCCAAAGCAGGTAATCCGGCTATCTCATCAAACAGTGGGGAGAATTCACCCAA
ACCCAAATCCATGGCAGCAAGCTTAGCCACCACCCCTGCAGCTGCCAAGGTGATGCCATC
TGCAGCACCAATTGTCAGTCAAACAGTAAGGAAGTCACTGTCATACAAGGAAGTGGCAAT
AGCTGCACCAGGAACTCTTGCCAAAGCATTGAATGATGTAACAGAGGAAAAGGATGCAAC
TGCTCCAGGTGTAAATCTTGGAAGTGCCAAGGCTCCCAAAGAAAGCAATGTTCGCCCTTC
TGAGGAGAAAGACGGAGCAATACAAGTGTCACCAAAGGATAACAATTTGCAAGTATCAAA
AGCAACAGATGAGCACAAATCTCCCAGTTCTGATACTGAACAAGCCAATGGTTCGGTAGG
ATCAAATCAAGCTGAGAAGGCCTCAGATTCAGCAGAGACATCTACAGACAAGAACCAATC
ACCAGCAGCACTAGCGGACGTCCCAAATGAAGAAGCAGCAACTTTGACTGAGGCGAATGA
TTCTTCATCCAATGATGATGAAACAGGTCCAGGAGAGGATAATCAAGAACAGCTGTCTAG
TGGGGCCGAAAATGAGAAATCTTCACCATCTGGAAGTGAAAAGAATGATTCACCAGTAGA
AGGTGCCAAAGAGACGGCCAGTAAACTCAATGCTGCTGCTGCTCCATTCAGTCCAGCCAC
TGTGCCAGCTTTTGGTTCAATGGCCGTACCAGGTTTCAGAGAACATGGAGGACTCCTGCC
ATCACCAGCCAATGTACCCCCAATGCTGGCCATCCCTCTCCGTAAGCACCCTCACCAATC
TGCGACTGCAAGGGTTCCTTATGGTCCACGTCTAGCCGGAGGGTTCAACAGATCAGGGCA
CCGGGTGCCTCGTAACAAGCCTGTGTTGCCAAGCGGAGAAGTTCTTCCAGAGGCAGCCAC
ATCCCCTAAAGTGATGAACCCTCATGCGGCGGAGTTTGTGCCGGGTCAATCTCGGAGTCC
TGATGGCCATCCAGGATCTCCTACTGAACCTCTAGCATCGCCAGCTGGTATTCAAGCATC
ACTGGATGGGCTTCCATCATCTCCAGATAGTATAGTTGAATCACCCAAGACTGTATCCCC
GCAAGTTTCAGAAACTAGTGAGACTAGTCCCGAAGGAAACGATACATCTAGTGGAGTTGA
TGTTGAAGCTGGGACTGAGAGCAACAACACGGAGGAGAAGAACAACCATGTGGAATGTGA
GGACAGTGAAGTGAAACCTGATCAAGCCATAGTTTCTGAAGGTGCTGAAGTTGACGCAAC
AGCCCCGAAAGATGCTCGAGATGACGCTTCAACCCCAAAGGATGCTCAAGATGATTCAAG
CTTGACTGAAAAGCCGAAGTCCTGGGCTGATTACAGCGACGGGGAAGTCGAGGCCGTTCA
GGTTGCGAGCTAAGAAAAGATGGTCTTCTCAGCCTCTCAGGTAGTTACAGGAAATTTTAT
TCTTACACAGATGAGCCTTTCTTATGGACAATAAAAGCATGCTAATGGAAACCAACATGC
TGCTGTTTTTTTGCTGAAAGGAGGAGATGCTGGTTTTCTGGGTAGAGAATTAGTTGCTTT
CTGATCTATTTCATGGTTTCTAGTACCTACTTGTTTCTGCTGCCCTGCAGTGGTGCTACG
GTATTGCAAGGGCTTGCATTGCCATGGAACTTTGAACATCTTCAGAATGTCCAACTGTCA
TCATGGTGGCCTTGTTTCAGTTTGCTTTGTCATTGCAAAGGAGCTTGGGAAGATCAGAGA
GGTGGTAAACACGTTTTGCTTGGCATTTTTATTTCCTTTATCCATAAACTGGACACACTG
CCGACTTGACATCTCTGTAGTTATTTCTTCTGAATTTTGATAAATTAGACTGCTGTAAAG
AAAATCGACACTTCCCTGAGCAGGAAGTTTGTATCAAGTGTCCCTGTAATCAGGCCGTTG
CTTTTTGGACAATTTTGCTTGTACAAGAATCCATGAGACACTGATCCATTTTGTGATTAT
CACTTGATTTGATTTGATTTGAAGATTAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_2220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g15660.1	814	0.0	protein\|tetratricopeptide repeat, putative, expressed
Brachypodium v1_2	Bradi3g53907.1	1763	0.0
Arabidopsis v10	AT4G28080.1	1819	3e-75	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:13948993-13957840 REVERSE LENGTH=1819