barSeed - Barley Seed Development Database

Probe CUST_37186_PI390587928

Source Contig U35_2221

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37186_PI390587928	Hv_44K_v2	AATCAGGCCGTTGCTTTTGGACAATTTTGCTTGTACAAGAATCCATAGACACTATCCATT	706	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.864	10.130	1.664	0.679	0.855	0.769
Raw	97.594	139.195	17.825	10.917	2.821	3.645

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC05365	769	3e-25	4 - 63	100	60 / 60	minus	ABC05365
Harvest21	ABC05364	2627	8e-21	2508 - 2570	95	60 / 63	plus	ABC05364
Harvest35	U35_2221	769	3e-25	707 - 766	100	60 / 60	plus
Harvest35	U35_2220	2627	8e-21	2508 - 2570	95	60 / 63	plus

Contig Sequence (769 bp)

>U35_2221 769 Hv_44K_v2
TCAAGCATCACTGGATGGGCTTCCATCATCTCCAGATAGTATAGTTGAATCACCCAAGAC
TGTATCCCCGCAAGTTTCAGAAACTAGTGAGACTAGTCCCGAAGGAAACGATACATCTAG
TGGAGTTGATGTTGAAGCTGGGACTGAGAGCAACAACACGGAGGAGAAGAACAACCATGT
GGAATGTGAGGACAGTGAAGTGAAACCTGATCAAGCCATAGTTTCTGAAGGTGCTGAAGT
TGACGCAACAGCCCCGAAAGATGCTCGAGATGACGCTTCAACCCCAAAGGATGCTCAAGA
TGATTCAAGCTTGACTGAAAAGCCGAAGTCCTGGGCTGATTACAGCGACGGGGAAGTCGA
GGCCGTTCAGGTTGCGAGCTAAGAAAAGATGGTCTTCTCAGCCTCTCAGTGGTGCTACGG
TATTGCAAGGGCTTGCATTGCCATGGAACTTTGAACATCTTCAGAATGTCCAACTGTCAT
CATGGTGGCCTTGTTTCAGTTTGCTTTGTCATTGCAAAGGAGCTTGGGAAGATCAGAGAG
GTGGTAAACACGTTTTGCTTGGCATTTTTATTTCCTTTATCCATAAACTGGACACACTGC
CGACTTGACATCTCTGTAGTTATTTCTTCTGAATTTTGATAAATTAGACTGCTGTAAAGA
AAATCGACACTTCCCTGAGCAGGAAGTTTGTATCAAGTGTCCCTGTAATCAGGCCGTTGC
TTTTGGACAATTTTGCTTGTACAAGAATCCATAGACACTATCCATTTTG

Homology of Contig U35_2221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None