barSeed - Barley Seed Development Database

Probe CUST_37185_PI390587928

Source Contig U35_2222

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37185_PI390587928	Hv_44K_v2	TGTGAGATGTAAGAATTGTTCCAAGTTCATCTCTTCAATGCATTAGAAAGTTCAGAAGTC	1624	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.152	0.632	2.345	2.297	0.952	1.085
Raw	209.061	1449.938	4581.480	6974.300	1007.516	1262.481

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248424.1	1664	2e-24	1585 - 1644	100	60 / 60	plus	ABC05845
MLOC	MLOC_38278.1	1650	2e-23	1593 - 1650	100	58 / 58	plus	ABC05845
JLOC1	JLOC1_24878.1	1935	8e-25	1818 - 1877	100	60 / 60	plus
Harvest21	ABC05845	1703	3e-25	1625 - 1684	100	60 / 60	plus	ABC05845
Harvest35	U35_2222	1703	3e-25	1625 - 1684	100	60 / 60	plus

Contig Sequence (1703 bp)

>U35_2222 1703 Hv_44K_v2
GAATCCGAGCACCATAAAAAGCAGGGCGTGGGCAGGCGAGCAGAGCGCAAGCAGAGTCGC
TTGGCTGCACCCGGCACCGCTGCCCCCTTCTTCTCGTCAGCCGCATCTCCCACTCACCTC
ACTCCCACTCCCACCCCCCACTCTTCTACGCATCGAGGACGAAAGGGTAGGGTGGTGGTG
ACTGGTGAGGGAGCCGGGGAGCCGAGGGGGCGAGCTGCCAGTCGGAGGAGGAGATGGAGC
GAGGGCTCGCATTGCTGGGGCTGGGGCTGGCGCTGCTTCTGCTGGCGCCCTCTCGCCGCC
TGGCCTCGGCCGCTCCGGTGGAGGACGGCCTGCTCATCAATGGTGATTTCGAGACAGCAC
CGCCTGGTGGTTTCGTCAAATCTTCTTCTGTTTCGGAGGGCGCAGCGATCCCAAGCTGGA
CGATCAATGGAACAGTTGAGCTCATTTCCGCAGGCCAGCACCAGGGTGGCATGATCCTTA
TTGTTCCACAAGGGGATCATGCCGTACGGCTAGGGAATGATGCAGGCATTGGGCAGGTGG
TGCAGGTTGAGAAGGGCTCCGAGTACGCGATCACATTCAGTGCCGCCCGGACCTGCGCGC
AGCTGGAGTCACTGAATATCTCCGCTGGGAGCATATCGCAGACAGTCGACTTGCAGACAC
TGTACAGCATAGAAGGCTGGGATGCATATGCACTGGCTTTCCAAGCAGTGGATGAGCAGG
CCAACATTGAATTTAGGAACCCTGGCATGGAGGACGACCCAACCTGCGGGCCTATCCTTG
ACAACGTGGCCATCAAGAAGCTCTTCTCCCCCGACAAAGCAAAGGAGAACATGGTGGTCA
ATGGAGACTTTGAGGAGGGGCCATGGATGTTTCCAAACACAAGCTTCGGCGTCCTGCTCC
CGACAAACCTTGACGAGCAGACATCGGCCTTACCAGGGTGGATGATCGAATCGAACCGCG
CAGTCCGCTTCATCGACTCCGACCAGTACACTGTTCCCCAGGGGAAGCGCGCCATTGAGC
TTCTCTCCGGCAAGGAGGGCATCATCTCGCAGATGGTTGAGACGACCCCTCAGAAGGCGT
ACATCCTGACGTTCACGCTGGGCTCGGCAGGGGATTCGTGCCAGCCACCAATGGCCGTCA
TGGCATTCGCAGGCGACCAGGCCCAGAACTTCCACTACTCCCCTATGGGCAATGCCACGA
GTCAGGCCGTGAACGTCAACTTCACAGCGCGCGCCGAGAGGTCACGCGTTGCGCTCTACA
GCGTCTACTACAACACGAGAAGCGACGACCACAGCTCGCTGTGTGGGCCGGTGATCGACG
ACGTCCGTGTCTGGGGCTTGAATGGGGCTGCTGGGTTGAAGGCGAGCATCGGGATTCTTA
TTGCCATGGTTAGTGTCATCGTTCTCGTGCTGTTCTGAATATATACTACATATGTGACCT
CGCCTGCAAGGACGAGGAGGCCACTTAGTTTTGTTAGTAAGCCTGAGGTTTCTATGAGAT
TGAGTAATGTGAGCTTAGGCTCAAGCTACCAGTAGCTATAAATGGTTGTTCTGTTGCTTT
CTTGTGTGATTCTGAAAGTAGCAAGCCATGATGGGATTGCGTGGTTAGTGAGCCGGGCTT
GTAATGTGAGATGTAAGAATTGTTCCAAGTTCATCTCTTCAATGCATTAGAAAGTTCAGA
AGTCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2222 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55190.1	400	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g50250.1	394	0.0
Arabidopsis v10	AT1G29980.1	407	6e-174	Protein of unknown function, DUF642 \| chr1:10503411-10505994 REVERSE LENGTH=407